Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fMet_trna and rimP are separated by 206 nucleotides rimP and nusA are separated by 27 nucleotides nusA and infB are separated by 24 nucleotides
JDDGAC_21720: fMet_trna - tRNA-fMet(cat), at 4,157,296 to 4,157,372
_trna
JDDGAC_21725: rimP - ribosome maturation factor RimP, at 4,157,579 to 4,158,031
rimP
JDDGAC_21730: nusA - Transcription termination/antitermination protein NusA, at 4,158,059 to 4,159,546
nusA
JDDGAC_21735: infB - Translation initiation factor IF-2, at 4,159,571 to 4,162,243
infB
Position (kb)
4158
4159
4160 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4157.067 kb on - strand at 4157.085 kb on + strand at 4157.085 kb on + strand at 4157.095 kb on - strand at 4157.198 kb on + strand at 4157.198 kb on + strand at 4157.199 kb on - strand at 4157.250 kb on - strand at 4157.250 kb on - strand at 4157.250 kb on - strand at 4157.250 kb on - strand at 4157.491 kb on + strand at 4159.377 kb on + strand, within nusA at 4159.377 kb on + strand, within nusA at 4159.420 kb on + strand at 4159.516 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 4,157,067 - -0.9 4,157,085 + -0.3 4,157,085 + +1.0 4,157,095 - -0.8 4,157,198 + -0.0 4,157,198 + +0.6 4,157,199 - -0.6 4,157,250 - +1.3 4,157,250 - -0.1 4,157,250 - +0.7 4,157,250 - +1.9 4,157,491 + +3.7 4,159,377 + nusA JDDGAC_21730 0.89 +0.4 4,159,377 + nusA JDDGAC_21730 0.89 -2.0 4,159,420 + -1.1 4,159,516 + -2.3
Or see this region's nucleotide sequence