Strain Fitness in Escherichia coli ECRC98 around JDDGAC_18525

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntphoU and JDDGAC_18525 are separated by 424 nucleotidesJDDGAC_18525 and espY5 are separated by 89 nucleotides JDDGAC_18520: phoU - phosphate signaling complex protein PhoU, at 3,523,705 to 3,524,430 phoU JDDGAC_18525: JDDGAC_18525 - hypothetical protein, at 3,524,855 to 3,524,989 _18525 JDDGAC_18530: espY5 - hypothetical protein, at 3,525,079 to 3,527,340 espY5 Position (kb) 3524 3525Strain fitness (log2 ratio) -2 -1 0 1 2at 3524.428 kb on + strandat 3524.435 kb on - strandat 3524.435 kb on - strandat 3524.487 kb on - strandat 3524.487 kb on - strandat 3524.490 kb on + strandat 3524.490 kb on + strandat 3524.490 kb on + strandat 3524.490 kb on + strandat 3524.490 kb on + strandat 3524.490 kb on + strandat 3524.491 kb on - strandat 3524.491 kb on - strandat 3524.491 kb on - strandat 3524.491 kb on - strandat 3524.491 kb on - strandat 3524.491 kb on - strandat 3524.575 kb on + strandat 3524.590 kb on - strandat 3524.702 kb on + strandat 3524.860 kb on + strandat 3524.861 kb on - strandat 3524.872 kb on + strand, within JDDGAC_18525at 3524.873 kb on - strand, within JDDGAC_18525at 3524.897 kb on - strand, within JDDGAC_18525at 3525.002 kb on + strandat 3525.014 kb on + strandat 3525.015 kb on - strandat 3525.082 kb on + strandat 3525.090 kb on + strandat 3525.241 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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3,524,428 + +0.8
3,524,435 - -1.2
3,524,435 - +1.1
3,524,487 - -0.5
3,524,487 - +0.7
3,524,490 + +0.8
3,524,490 + -0.0
3,524,490 + +2.2
3,524,490 + +0.9
3,524,490 + +0.4
3,524,490 + +2.0
3,524,491 - -0.6
3,524,491 - +0.1
3,524,491 - -0.7
3,524,491 - +1.9
3,524,491 - -0.0
3,524,491 - +0.5
3,524,575 + +0.4
3,524,590 - -0.2
3,524,702 + +1.3
3,524,860 + -0.1
3,524,861 - +0.2
3,524,872 + JDDGAC_18525 0.13 +1.4
3,524,873 - JDDGAC_18525 0.13 -0.2
3,524,897 - JDDGAC_18525 0.31 +1.0
3,525,002 + -0.2
3,525,014 + -0.8
3,525,015 - +0.4
3,525,082 + -0.6
3,525,090 + +0.5
3,525,241 - -2.4

Or see this region's nucleotide sequence