Strain Fitness in Escherichia coli ECRC98 around JDDGAC_09265

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_09260 and JDDGAC_09265 overlap by 1 nucleotidesJDDGAC_09265 and JDDGAC_09270 are separated by 339 nucleotides JDDGAC_09260: JDDGAC_09260 - oxidoreductase, at 1,632,208 to 1,633,980 _09260 JDDGAC_09265: JDDGAC_09265 - phage portal protein, at 1,633,980 to 1,635,014 _09265 JDDGAC_09270: JDDGAC_09270 - hypothetical protein, at 1,635,354 to 1,637,186 _09270 Position (kb) 1633 1634 1635 1636Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6at 1633.017 kb on + strand, within JDDGAC_09260at 1633.017 kb on + strand, within JDDGAC_09260at 1633.048 kb on + strand, within JDDGAC_09260at 1633.049 kb on - strand, within JDDGAC_09260at 1633.049 kb on - strand, within JDDGAC_09260at 1633.400 kb on - strand, within JDDGAC_09260at 1633.604 kb on - strand, within JDDGAC_09260at 1633.604 kb on - strand, within JDDGAC_09260at 1633.604 kb on - strand, within JDDGAC_09260at 1633.615 kb on + strand, within JDDGAC_09260at 1633.615 kb on + strand, within JDDGAC_09260at 1633.769 kb on - strand, within JDDGAC_09260at 1633.850 kb on - strandat 1633.976 kb on - strandat 1634.137 kb on - strand, within JDDGAC_09265at 1634.329 kb on - strand, within JDDGAC_09265at 1634.376 kb on + strand, within JDDGAC_09265at 1634.376 kb on + strand, within JDDGAC_09265at 1634.377 kb on - strand, within JDDGAC_09265at 1634.607 kb on + strand, within JDDGAC_09265at 1634.607 kb on + strand, within JDDGAC_09265at 1634.607 kb on + strand, within JDDGAC_09265at 1634.607 kb on + strand, within JDDGAC_09265at 1634.608 kb on - strand, within JDDGAC_09265at 1634.608 kb on - strand, within JDDGAC_09265at 1634.608 kb on - strand, within JDDGAC_09265at 1634.608 kb on - strand, within JDDGAC_09265at 1634.735 kb on + strand, within JDDGAC_09265at 1635.246 kb on - strandat 1635.246 kb on - strandat 1635.317 kb on - strandat 1635.317 kb on - strandat 1635.321 kb on - strandat 1635.327 kb on - strandat 1635.327 kb on - strandat 1635.348 kb on - strandat 1635.348 kb on - strandat 1635.393 kb on + strandat 1635.437 kb on - strandat 1635.912 kb on + strand, within JDDGAC_09270at 1635.979 kb on - strand, within JDDGAC_09270

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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1,633,017 + JDDGAC_09260 0.46 +3.8
1,633,017 + JDDGAC_09260 0.46 +4.0
1,633,048 + JDDGAC_09260 0.47 +4.2
1,633,049 - JDDGAC_09260 0.47 +4.0
1,633,049 - JDDGAC_09260 0.47 +3.6
1,633,400 - JDDGAC_09260 0.67 +3.3
1,633,604 - JDDGAC_09260 0.79 +3.3
1,633,604 - JDDGAC_09260 0.79 +1.9
1,633,604 - JDDGAC_09260 0.79 +4.4
1,633,615 + JDDGAC_09260 0.79 +3.6
1,633,615 + JDDGAC_09260 0.79 +4.3
1,633,769 - JDDGAC_09260 0.88 +3.8
1,633,850 - +3.9
1,633,976 - +3.6
1,634,137 - JDDGAC_09265 0.15 +3.6
1,634,329 - JDDGAC_09265 0.34 +3.7
1,634,376 + JDDGAC_09265 0.38 +3.9
1,634,376 + JDDGAC_09265 0.38 +4.9
1,634,377 - JDDGAC_09265 0.38 +3.5
1,634,607 + JDDGAC_09265 0.61 +4.0
1,634,607 + JDDGAC_09265 0.61 +3.1
1,634,607 + JDDGAC_09265 0.61 +3.5
1,634,607 + JDDGAC_09265 0.61 +2.4
1,634,608 - JDDGAC_09265 0.61 +4.7
1,634,608 - JDDGAC_09265 0.61 +2.1
1,634,608 - JDDGAC_09265 0.61 +2.9
1,634,608 - JDDGAC_09265 0.61 +4.3
1,634,735 + JDDGAC_09265 0.73 +5.9
1,635,246 - +3.5
1,635,246 - +2.5
1,635,317 - +3.7
1,635,317 - +4.3
1,635,321 - +3.2
1,635,327 - +3.9
1,635,327 - +3.1
1,635,348 - +4.9
1,635,348 - +4.1
1,635,393 + +3.2
1,635,437 - +5.1
1,635,912 + JDDGAC_09270 0.30 +0.7
1,635,979 - JDDGAC_09270 0.34 +4.2

Or see this region's nucleotide sequence