Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_09260 and JDDGAC_09265 overlap by 1 nucleotides JDDGAC_09265 and JDDGAC_09270 are separated by 339 nucleotides
JDDGAC_09260: JDDGAC_09260 - oxidoreductase, at 1,632,208 to 1,633,980
_09260
JDDGAC_09265: JDDGAC_09265 - phage portal protein, at 1,633,980 to 1,635,014
_09265
JDDGAC_09270: JDDGAC_09270 - hypothetical protein, at 1,635,354 to 1,637,186
_09270
Position (kb)
1633
1634
1635
1636 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5
6 at 1633.017 kb on + strand, within JDDGAC_09260 at 1633.017 kb on + strand, within JDDGAC_09260 at 1633.048 kb on + strand, within JDDGAC_09260 at 1633.049 kb on - strand, within JDDGAC_09260 at 1633.049 kb on - strand, within JDDGAC_09260 at 1633.400 kb on - strand, within JDDGAC_09260 at 1633.604 kb on - strand, within JDDGAC_09260 at 1633.604 kb on - strand, within JDDGAC_09260 at 1633.604 kb on - strand, within JDDGAC_09260 at 1633.615 kb on + strand, within JDDGAC_09260 at 1633.615 kb on + strand, within JDDGAC_09260 at 1633.769 kb on - strand, within JDDGAC_09260 at 1633.850 kb on - strand at 1633.976 kb on - strand at 1634.137 kb on - strand, within JDDGAC_09265 at 1634.329 kb on - strand, within JDDGAC_09265 at 1634.376 kb on + strand, within JDDGAC_09265 at 1634.376 kb on + strand, within JDDGAC_09265 at 1634.377 kb on - strand, within JDDGAC_09265 at 1634.607 kb on + strand, within JDDGAC_09265 at 1634.607 kb on + strand, within JDDGAC_09265 at 1634.607 kb on + strand, within JDDGAC_09265 at 1634.607 kb on + strand, within JDDGAC_09265 at 1634.608 kb on - strand, within JDDGAC_09265 at 1634.608 kb on - strand, within JDDGAC_09265 at 1634.608 kb on - strand, within JDDGAC_09265 at 1634.608 kb on - strand, within JDDGAC_09265 at 1634.735 kb on + strand, within JDDGAC_09265 at 1635.246 kb on - strand at 1635.246 kb on - strand at 1635.317 kb on - strand at 1635.317 kb on - strand at 1635.321 kb on - strand at 1635.327 kb on - strand at 1635.327 kb on - strand at 1635.348 kb on - strand at 1635.348 kb on - strand at 1635.393 kb on + strand at 1635.437 kb on - strand at 1635.912 kb on + strand, within JDDGAC_09270 at 1635.979 kb on - strand, within JDDGAC_09270
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 1,633,017 + JDDGAC_09260 0.46 +3.8 1,633,017 + JDDGAC_09260 0.46 +4.0 1,633,048 + JDDGAC_09260 0.47 +4.2 1,633,049 - JDDGAC_09260 0.47 +4.0 1,633,049 - JDDGAC_09260 0.47 +3.6 1,633,400 - JDDGAC_09260 0.67 +3.3 1,633,604 - JDDGAC_09260 0.79 +3.3 1,633,604 - JDDGAC_09260 0.79 +1.9 1,633,604 - JDDGAC_09260 0.79 +4.4 1,633,615 + JDDGAC_09260 0.79 +3.6 1,633,615 + JDDGAC_09260 0.79 +4.3 1,633,769 - JDDGAC_09260 0.88 +3.8 1,633,850 - +3.9 1,633,976 - +3.6 1,634,137 - JDDGAC_09265 0.15 +3.6 1,634,329 - JDDGAC_09265 0.34 +3.7 1,634,376 + JDDGAC_09265 0.38 +3.9 1,634,376 + JDDGAC_09265 0.38 +4.9 1,634,377 - JDDGAC_09265 0.38 +3.5 1,634,607 + JDDGAC_09265 0.61 +4.0 1,634,607 + JDDGAC_09265 0.61 +3.1 1,634,607 + JDDGAC_09265 0.61 +3.5 1,634,607 + JDDGAC_09265 0.61 +2.4 1,634,608 - JDDGAC_09265 0.61 +4.7 1,634,608 - JDDGAC_09265 0.61 +2.1 1,634,608 - JDDGAC_09265 0.61 +2.9 1,634,608 - JDDGAC_09265 0.61 +4.3 1,634,735 + JDDGAC_09265 0.73 +5.9 1,635,246 - +3.5 1,635,246 - +2.5 1,635,317 - +3.7 1,635,317 - +4.3 1,635,321 - +3.2 1,635,327 - +3.9 1,635,327 - +3.1 1,635,348 - +4.9 1,635,348 - +4.1 1,635,393 + +3.2 1,635,437 - +5.1 1,635,912 + JDDGAC_09270 0.30 +0.7 1,635,979 - JDDGAC_09270 0.34 +4.2
Or see this region's nucleotide sequence