Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_09240 and JDDGAC_09245 are separated by 99 nucleotides JDDGAC_09245 and JDDGAC_09250 are separated by 3 nucleotides JDDGAC_09250 and JDDGAC_09255 are separated by 58 nucleotides
JDDGAC_09240: JDDGAC_09240 - Head completion/stabilization protein, at 1,628,692 to 1,629,201
_09240
JDDGAC_09245: JDDGAC_09245 - Terminase, endonuclease subunit, at 1,629,301 to 1,630,044
_09245
JDDGAC_09250: JDDGAC_09250 - phage major capsid protein, P2 family, at 1,630,048 to 1,631,121
_09250
JDDGAC_09255: JDDGAC_09255 - Capsid assembly scaffolding protein, at 1,631,180 to 1,632,034
_09255
Position (kb) 1630
1631
1632 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 1629.057 kb on + strand, within JDDGAC_09240 at 1629.058 kb on - strand, within JDDGAC_09240 at 1629.206 kb on - strand at 1629.206 kb on - strand at 1629.206 kb on - strand at 1629.206 kb on - strand at 1629.358 kb on - strand at 1629.716 kb on + strand, within JDDGAC_09245 at 1629.717 kb on - strand, within JDDGAC_09245 at 1629.886 kb on - strand, within JDDGAC_09245 at 1629.900 kb on - strand, within JDDGAC_09245 at 1629.953 kb on + strand, within JDDGAC_09245 at 1629.953 kb on + strand, within JDDGAC_09245 at 1629.954 kb on - strand, within JDDGAC_09245 at 1630.131 kb on - strand at 1630.146 kb on - strand at 1630.167 kb on - strand, within JDDGAC_09250 at 1630.229 kb on + strand, within JDDGAC_09250 at 1630.230 kb on - strand, within JDDGAC_09250 at 1630.230 kb on - strand, within JDDGAC_09250 at 1630.233 kb on - strand, within JDDGAC_09250 at 1630.333 kb on - strand, within JDDGAC_09250 at 1630.402 kb on + strand, within JDDGAC_09250 at 1630.503 kb on - strand, within JDDGAC_09250 at 1630.781 kb on + strand, within JDDGAC_09250 at 1630.803 kb on + strand, within JDDGAC_09250 at 1630.820 kb on + strand, within JDDGAC_09250 at 1631.087 kb on + strand at 1631.087 kb on + strand at 1631.088 kb on - strand at 1631.088 kb on - strand at 1631.095 kb on - strand at 1631.122 kb on - strand at 1631.138 kb on - strand at 1631.145 kb on - strand at 1631.326 kb on + strand, within JDDGAC_09255 at 1631.326 kb on + strand, within JDDGAC_09255 at 1631.326 kb on + strand, within JDDGAC_09255 at 1631.555 kb on - strand, within JDDGAC_09255 at 1631.622 kb on + strand, within JDDGAC_09255 at 1631.673 kb on + strand, within JDDGAC_09255 at 1631.673 kb on + strand, within JDDGAC_09255 at 1631.674 kb on - strand, within JDDGAC_09255 at 1631.722 kb on - strand, within JDDGAC_09255 at 1631.722 kb on - strand, within JDDGAC_09255 at 1631.753 kb on - strand, within JDDGAC_09255 at 1631.854 kb on - strand, within JDDGAC_09255 at 1631.916 kb on + strand, within JDDGAC_09255 at 1631.916 kb on + strand, within JDDGAC_09255
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 1,629,057 + JDDGAC_09240 0.72 +2.8 1,629,058 - JDDGAC_09240 0.72 +3.7 1,629,206 - +3.8 1,629,206 - +1.6 1,629,206 - +2.5 1,629,206 - +1.2 1,629,358 - +4.4 1,629,716 + JDDGAC_09245 0.56 +2.6 1,629,717 - JDDGAC_09245 0.56 +3.9 1,629,886 - JDDGAC_09245 0.79 +3.6 1,629,900 - JDDGAC_09245 0.81 +3.7 1,629,953 + JDDGAC_09245 0.88 +3.8 1,629,953 + JDDGAC_09245 0.88 +3.1 1,629,954 - JDDGAC_09245 0.88 +3.2 1,630,131 - +2.7 1,630,146 - +3.6 1,630,167 - JDDGAC_09250 0.11 +1.3 1,630,229 + JDDGAC_09250 0.17 +4.1 1,630,230 - JDDGAC_09250 0.17 +2.5 1,630,230 - JDDGAC_09250 0.17 +2.9 1,630,233 - JDDGAC_09250 0.17 +4.1 1,630,333 - JDDGAC_09250 0.27 +2.8 1,630,402 + JDDGAC_09250 0.33 +2.9 1,630,503 - JDDGAC_09250 0.42 +2.8 1,630,781 + JDDGAC_09250 0.68 +3.0 1,630,803 + JDDGAC_09250 0.70 +3.6 1,630,820 + JDDGAC_09250 0.72 +3.6 1,631,087 + +2.9 1,631,087 + +3.6 1,631,088 - +3.6 1,631,088 - +3.1 1,631,095 - +3.8 1,631,122 - +3.7 1,631,138 - +3.1 1,631,145 - +4.4 1,631,326 + JDDGAC_09255 0.17 +4.2 1,631,326 + JDDGAC_09255 0.17 +5.2 1,631,326 + JDDGAC_09255 0.17 +3.5 1,631,555 - JDDGAC_09255 0.44 +3.2 1,631,622 + JDDGAC_09255 0.52 +3.6 1,631,673 + JDDGAC_09255 0.58 +4.1 1,631,673 + JDDGAC_09255 0.58 +4.0 1,631,674 - JDDGAC_09255 0.58 +4.3 1,631,722 - JDDGAC_09255 0.63 +3.0 1,631,722 - JDDGAC_09255 0.63 +2.5 1,631,753 - JDDGAC_09255 0.67 +3.1 1,631,854 - JDDGAC_09255 0.79 +3.8 1,631,916 + JDDGAC_09255 0.86 +3.3 1,631,916 + JDDGAC_09255 0.86 +2.8
Or see this region's nucleotide sequence