Strain Fitness in Escherichia coli ECRC98 around JDDGAC_09185

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_09175 and JDDGAC_09180 overlap by 4 nucleotidesJDDGAC_09180 and JDDGAC_09185 overlap by 8 nucleotidesJDDGAC_09185 and JDDGAC_09190 are separated by 4 nucleotidesJDDGAC_09190 and JDDGAC_09195 overlap by 4 nucleotides JDDGAC_09175: JDDGAC_09175 - Phage tail collar protein, at 1,622,075 to 1,623,274 _09175 JDDGAC_09180: JDDGAC_09180 - phage tail protein I, at 1,623,271 to 1,623,882 _09180 JDDGAC_09185: JDDGAC_09185 - Baseplate protein J, at 1,623,875 to 1,624,783 _09185 JDDGAC_09190: JDDGAC_09190 - Baseplate protein W, at 1,624,788 to 1,625,135 _09190 JDDGAC_09195: JDDGAC_09195 - Spike protein, at 1,625,132 to 1,625,767 _09195 Position (kb) 1623 1624 1625Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6at 1622.946 kb on + strand, within JDDGAC_09175at 1622.979 kb on - strand, within JDDGAC_09175at 1622.994 kb on + strand, within JDDGAC_09175at 1622.994 kb on + strand, within JDDGAC_09175at 1623.200 kb on - strandat 1623.244 kb on + strandat 1623.261 kb on + strandat 1623.299 kb on - strandat 1623.339 kb on + strand, within JDDGAC_09180at 1623.339 kb on + strand, within JDDGAC_09180at 1623.386 kb on + strand, within JDDGAC_09180at 1623.386 kb on + strand, within JDDGAC_09180at 1623.387 kb on - strand, within JDDGAC_09180at 1623.387 kb on - strand, within JDDGAC_09180at 1623.421 kb on - strand, within JDDGAC_09180at 1623.425 kb on - strand, within JDDGAC_09180at 1623.433 kb on - strand, within JDDGAC_09180at 1623.498 kb on - strand, within JDDGAC_09180at 1623.514 kb on - strand, within JDDGAC_09180at 1623.633 kb on + strand, within JDDGAC_09180at 1623.633 kb on + strand, within JDDGAC_09180at 1623.634 kb on - strand, within JDDGAC_09180at 1623.634 kb on - strand, within JDDGAC_09180at 1623.634 kb on - strand, within JDDGAC_09180at 1623.634 kb on - strand, within JDDGAC_09180at 1623.637 kb on - strand, within JDDGAC_09180at 1623.643 kb on - strand, within JDDGAC_09180at 1623.660 kb on - strand, within JDDGAC_09180at 1623.660 kb on - strand, within JDDGAC_09180at 1623.702 kb on + strand, within JDDGAC_09180at 1623.703 kb on - strand, within JDDGAC_09180at 1623.931 kb on + strandat 1624.005 kb on + strand, within JDDGAC_09185at 1624.005 kb on + strand, within JDDGAC_09185at 1624.055 kb on - strand, within JDDGAC_09185at 1624.056 kb on + strand, within JDDGAC_09185at 1624.057 kb on - strand, within JDDGAC_09185at 1624.057 kb on - strand, within JDDGAC_09185at 1624.057 kb on - strand, within JDDGAC_09185at 1624.348 kb on - strand, within JDDGAC_09185at 1624.353 kb on + strand, within JDDGAC_09185at 1624.379 kb on + strand, within JDDGAC_09185at 1624.380 kb on - strand, within JDDGAC_09185at 1624.586 kb on - strand, within JDDGAC_09185at 1624.758 kb on - strandat 1624.933 kb on + strand, within JDDGAC_09190at 1624.933 kb on + strand, within JDDGAC_09190at 1624.933 kb on + strand, within JDDGAC_09190at 1624.933 kb on + strand, within JDDGAC_09190at 1624.933 kb on + strand, within JDDGAC_09190at 1624.934 kb on - strand, within JDDGAC_09190at 1624.947 kb on - strand, within JDDGAC_09190at 1625.072 kb on + strand, within JDDGAC_09190at 1625.072 kb on + strand, within JDDGAC_09190at 1625.073 kb on - strand, within JDDGAC_09190at 1625.182 kb on + strandat 1625.190 kb on - strandat 1625.194 kb on + strandat 1625.221 kb on + strand, within JDDGAC_09195at 1625.396 kb on - strand, within JDDGAC_09195at 1625.434 kb on - strand, within JDDGAC_09195at 1625.718 kb on - strandat 1625.749 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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1,622,946 + JDDGAC_09175 0.73 +3.7
1,622,979 - JDDGAC_09175 0.75 +3.0
1,622,994 + JDDGAC_09175 0.77 +4.1
1,622,994 + JDDGAC_09175 0.77 +2.8
1,623,200 - +2.4
1,623,244 + +5.4
1,623,261 + +5.9
1,623,299 - +2.6
1,623,339 + JDDGAC_09180 0.11 +3.8
1,623,339 + JDDGAC_09180 0.11 +4.1
1,623,386 + JDDGAC_09180 0.19 +3.8
1,623,386 + JDDGAC_09180 0.19 +3.8
1,623,387 - JDDGAC_09180 0.19 +3.3
1,623,387 - JDDGAC_09180 0.19 +3.6
1,623,421 - JDDGAC_09180 0.25 +4.2
1,623,425 - JDDGAC_09180 0.25 +4.6
1,623,433 - JDDGAC_09180 0.26 +3.9
1,623,498 - JDDGAC_09180 0.37 +3.4
1,623,514 - JDDGAC_09180 0.40 +3.0
1,623,633 + JDDGAC_09180 0.59 +4.0
1,623,633 + JDDGAC_09180 0.59 +3.8
1,623,634 - JDDGAC_09180 0.59 +3.1
1,623,634 - JDDGAC_09180 0.59 +4.2
1,623,634 - JDDGAC_09180 0.59 +3.3
1,623,634 - JDDGAC_09180 0.59 +4.3
1,623,637 - JDDGAC_09180 0.60 +1.3
1,623,643 - JDDGAC_09180 0.61 +2.9
1,623,660 - JDDGAC_09180 0.64 +3.1
1,623,660 - JDDGAC_09180 0.64 +3.0
1,623,702 + JDDGAC_09180 0.70 +4.8
1,623,703 - JDDGAC_09180 0.71 +3.2
1,623,931 + +3.4
1,624,005 + JDDGAC_09185 0.14 +3.6
1,624,005 + JDDGAC_09185 0.14 +4.0
1,624,055 - JDDGAC_09185 0.20 +2.8
1,624,056 + JDDGAC_09185 0.20 +4.7
1,624,057 - JDDGAC_09185 0.20 +3.6
1,624,057 - JDDGAC_09185 0.20 +2.8
1,624,057 - JDDGAC_09185 0.20 +3.4
1,624,348 - JDDGAC_09185 0.52 +4.1
1,624,353 + JDDGAC_09185 0.53 +3.4
1,624,379 + JDDGAC_09185 0.55 +5.1
1,624,380 - JDDGAC_09185 0.56 +3.7
1,624,586 - JDDGAC_09185 0.78 +3.5
1,624,758 - +5.1
1,624,933 + JDDGAC_09190 0.42 +4.1
1,624,933 + JDDGAC_09190 0.42 +3.9
1,624,933 + JDDGAC_09190 0.42 +3.1
1,624,933 + JDDGAC_09190 0.42 +4.0
1,624,933 + JDDGAC_09190 0.42 +4.3
1,624,934 - JDDGAC_09190 0.42 +4.0
1,624,947 - JDDGAC_09190 0.46 +3.5
1,625,072 + JDDGAC_09190 0.82 +4.1
1,625,072 + JDDGAC_09190 0.82 +3.3
1,625,073 - JDDGAC_09190 0.82 +3.5
1,625,182 + +3.1
1,625,190 - +3.7
1,625,194 + +2.7
1,625,221 + JDDGAC_09195 0.14 +3.5
1,625,396 - JDDGAC_09195 0.42 +3.8
1,625,434 - JDDGAC_09195 0.47 +3.3
1,625,718 - +3.6
1,625,749 + +2.8

Or see this region's nucleotide sequence