Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt potD and cobB are separated by 155 nucleotides cobB and nagK are separated by 15 nucleotides nagK and lolE are separated by 28 nucleotides
JDDGAC_07095: potD - spermidine/putrescine ABC transporter substrate-binding protein PotD, at 1,224,247 to 1,225,293
potD
JDDGAC_07100: cobB - NAD-dependent protein deacylase, at 1,225,449 to 1,226,270
cobB
JDDGAC_07105: nagK - N-acetylglucosamine kinase, at 1,226,286 to 1,227,197
nagK
JDDGAC_07110: lolE - lipoprotein-releasing ABC transporter permease subunit LolE, at 1,227,226 to 1,228,464
lolE
Position (kb) 1225
1226
1227 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1224.460 kb on + strand, within potD at 1224.499 kb on + strand, within potD at 1224.499 kb on + strand, within potD at 1224.502 kb on + strand, within potD at 1224.502 kb on + strand, within potD at 1224.503 kb on - strand, within potD at 1224.619 kb on + strand, within potD at 1224.632 kb on - strand, within potD at 1224.633 kb on + strand, within potD at 1224.780 kb on + strand, within potD at 1224.780 kb on + strand, within potD at 1224.834 kb on + strand, within potD at 1224.834 kb on + strand, within potD at 1224.835 kb on - strand, within potD at 1224.898 kb on + strand, within potD at 1224.898 kb on + strand, within potD at 1224.898 kb on + strand, within potD at 1224.898 kb on + strand, within potD at 1224.915 kb on + strand, within potD at 1224.972 kb on + strand, within potD at 1225.264 kb on + strand at 1225.264 kb on + strand at 1225.292 kb on - strand at 1225.451 kb on - strand at 1225.452 kb on + strand at 1225.668 kb on - strand, within cobB at 1225.669 kb on + strand, within cobB at 1225.708 kb on - strand, within cobB at 1225.755 kb on - strand, within cobB at 1225.767 kb on - strand, within cobB at 1225.851 kb on - strand, within cobB at 1226.143 kb on - strand, within cobB at 1226.288 kb on - strand at 1226.296 kb on - strand at 1226.371 kb on - strand at 1226.481 kb on - strand, within nagK at 1226.503 kb on - strand, within nagK at 1226.503 kb on - strand, within nagK at 1226.841 kb on - strand, within nagK at 1226.899 kb on - strand, within nagK at 1226.972 kb on - strand, within nagK at 1227.194 kb on - strand at 1227.218 kb on + strand at 1227.228 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 1,224,460 + potD JDDGAC_07095 0.20 +0.6 1,224,499 + potD JDDGAC_07095 0.24 -0.1 1,224,499 + potD JDDGAC_07095 0.24 -0.6 1,224,502 + potD JDDGAC_07095 0.24 +0.4 1,224,502 + potD JDDGAC_07095 0.24 -0.4 1,224,503 - potD JDDGAC_07095 0.24 +2.4 1,224,619 + potD JDDGAC_07095 0.36 -1.9 1,224,632 - potD JDDGAC_07095 0.37 -0.1 1,224,633 + potD JDDGAC_07095 0.37 +2.0 1,224,780 + potD JDDGAC_07095 0.51 -0.1 1,224,780 + potD JDDGAC_07095 0.51 -1.3 1,224,834 + potD JDDGAC_07095 0.56 -1.0 1,224,834 + potD JDDGAC_07095 0.56 +2.4 1,224,835 - potD JDDGAC_07095 0.56 +1.4 1,224,898 + potD JDDGAC_07095 0.62 -0.9 1,224,898 + potD JDDGAC_07095 0.62 +0.0 1,224,898 + potD JDDGAC_07095 0.62 +1.8 1,224,898 + potD JDDGAC_07095 0.62 +1.1 1,224,915 + potD JDDGAC_07095 0.64 -1.0 1,224,972 + potD JDDGAC_07095 0.69 +0.5 1,225,264 + -1.1 1,225,264 + -0.1 1,225,292 - +0.6 1,225,451 - -0.6 1,225,452 + +1.6 1,225,668 - cobB JDDGAC_07100 0.27 +0.1 1,225,669 + cobB JDDGAC_07100 0.27 +0.8 1,225,708 - cobB JDDGAC_07100 0.32 +3.1 1,225,755 - cobB JDDGAC_07100 0.37 +2.2 1,225,767 - cobB JDDGAC_07100 0.39 +0.7 1,225,851 - cobB JDDGAC_07100 0.49 -0.6 1,226,143 - cobB JDDGAC_07100 0.84 +0.2 1,226,288 - -2.5 1,226,296 - -0.4 1,226,371 - -2.2 1,226,481 - nagK JDDGAC_07105 0.21 +0.1 1,226,503 - nagK JDDGAC_07105 0.24 -0.8 1,226,503 - nagK JDDGAC_07105 0.24 -0.6 1,226,841 - nagK JDDGAC_07105 0.61 +0.4 1,226,899 - nagK JDDGAC_07105 0.67 +2.1 1,226,972 - nagK JDDGAC_07105 0.75 +2.6 1,227,194 - -1.9 1,227,218 + +0.9 1,227,228 - +1.3
Or see this region's nucleotide sequence