Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_06450 and JDDGAC_06455 are separated by 7 nucleotides JDDGAC_06455 and JDDGAC_06460 overlap by 4 nucleotides JDDGAC_06460 and JDDGAC_06465 are separated by 11 nucleotides JDDGAC_06465 and JDDGAC_06470 are separated by 11 nucleotides JDDGAC_06470 and JDDGAC_06475 are separated by 41 nucleotides
JDDGAC_06450: JDDGAC_06450 - Tail tube protein, at 1,129,578 to 1,130,318
_06450
JDDGAC_06455: JDDGAC_06455 - Tail tube terminator protein, at 1,130,326 to 1,130,721
_06455
JDDGAC_06460: JDDGAC_06460 - Tail completion protein Z, at 1,130,718 to 1,131,296
_06460
JDDGAC_06465: JDDGAC_06465 - phage tail protein, at 1,131,308 to 1,131,661
_06465
JDDGAC_06470: JDDGAC_06470 - DNA-packaging protein FI, at 1,131,673 to 1,132,071
_06470
JDDGAC_06475: JDDGAC_06475 - Major capsid protein, at 1,132,113 to 1,133,138
_06475
Position (kb) 1130
1131
1132 Strain fitness (log2 ratio) -1
0
1 at 1130.261 kb on - strand at 1130.340 kb on + strand at 1130.341 kb on - strand at 1130.348 kb on + strand at 1130.348 kb on + strand at 1130.349 kb on - strand at 1130.349 kb on - strand at 1130.801 kb on + strand, within JDDGAC_06460 at 1130.801 kb on + strand, within JDDGAC_06460 at 1131.147 kb on + strand, within JDDGAC_06460 at 1131.288 kb on + strand at 1131.296 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 1,130,261 - +0.1 1,130,340 + +0.5 1,130,341 - +0.4 1,130,348 + -0.1 1,130,348 + -1.5 1,130,349 - -0.7 1,130,349 - -0.3 1,130,801 + JDDGAC_06460 0.14 +1.7 1,130,801 + JDDGAC_06460 0.14 +0.1 1,131,147 + JDDGAC_06460 0.74 +0.1 1,131,288 + -0.3 1,131,296 + -1.5
Or see this region's nucleotide sequence