Strain Fitness in Escherichia coli ECRC98 around JDDGAC_05565

Experiment: Bas69

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntJDDGAC_05555 and JDDGAC_05560 are separated by 6 nucleotidesJDDGAC_05560 and JDDGAC_05565 overlap by 4 nucleotidesJDDGAC_05565 and JDDGAC_05570 are separated by 14 nucleotidesJDDGAC_05570 and JDDGAC_05575 are separated by 15 nucleotidesJDDGAC_05575 and JDDGAC_05580 overlap by 8 nucleotidesJDDGAC_05580 and JDDGAC_05585 overlap by 11 nucleotides JDDGAC_05555: JDDGAC_05555 - Mu prophage protein, at 974,443 to 974,958 _05555 JDDGAC_05560: JDDGAC_05560 - AsnC family protein, at 974,965 to 975,513 _05560 JDDGAC_05565: JDDGAC_05565 - hypothetical protein, at 975,510 to 975,821 _05565 JDDGAC_05570: JDDGAC_05570 - hypothetical protein, at 975,836 to 976,186 _05570 JDDGAC_05575: JDDGAC_05575 - hypothetical protein, at 976,202 to 976,534 _05575 JDDGAC_05580: JDDGAC_05580 - hypothetical protein, at 976,527 to 976,724 _05580 JDDGAC_05585: JDDGAC_05585 - hypothetical protein, at 976,714 to 977,010 _05585 Position (kb) 975 976Strain fitness (log2 ratio) -1 0 1 2at 974.515 kb on - strand, within JDDGAC_05555at 974.574 kb on - strand, within JDDGAC_05555at 974.645 kb on + strand, within JDDGAC_05555at 974.929 kb on + strandat 974.962 kb on - strandat 974.972 kb on + strandat 975.078 kb on + strand, within JDDGAC_05560at 975.113 kb on + strand, within JDDGAC_05560at 975.114 kb on - strand, within JDDGAC_05560at 975.114 kb on - strand, within JDDGAC_05560at 975.248 kb on - strand, within JDDGAC_05560at 975.402 kb on + strand, within JDDGAC_05560at 975.492 kb on - strandat 975.504 kb on - strandat 975.685 kb on - strand, within JDDGAC_05565at 975.716 kb on + strand, within JDDGAC_05565at 975.724 kb on - strand, within JDDGAC_05565at 975.887 kb on - strand, within JDDGAC_05570at 975.961 kb on + strand, within JDDGAC_05570at 976.469 kb on - strand, within JDDGAC_05575at 976.469 kb on - strand, within JDDGAC_05575at 976.491 kb on + strand, within JDDGAC_05575at 976.519 kb on + strandat 976.609 kb on + strand, within JDDGAC_05580at 976.627 kb on - strand, within JDDGAC_05580

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
remove
974,515 - JDDGAC_05555 0.14 -0.8
974,574 - JDDGAC_05555 0.25 -1.4
974,645 + JDDGAC_05555 0.39 -0.5
974,929 + +0.6
974,962 - +1.6
974,972 + -1.3
975,078 + JDDGAC_05560 0.21 -1.3
975,113 + JDDGAC_05560 0.27 +0.2
975,114 - JDDGAC_05560 0.27 +0.4
975,114 - JDDGAC_05560 0.27 -0.2
975,248 - JDDGAC_05560 0.52 +1.0
975,402 + JDDGAC_05560 0.80 +0.7
975,492 - -0.4
975,504 - +0.4
975,685 - JDDGAC_05565 0.56 +1.3
975,716 + JDDGAC_05565 0.66 +0.0
975,724 - JDDGAC_05565 0.69 +2.0
975,887 - JDDGAC_05570 0.15 -0.7
975,961 + JDDGAC_05570 0.36 +0.5
976,469 - JDDGAC_05575 0.80 +0.2
976,469 - JDDGAC_05575 0.80 +0.5
976,491 + JDDGAC_05575 0.87 +1.4
976,519 + -0.2
976,609 + JDDGAC_05580 0.41 +1.5
976,627 - JDDGAC_05580 0.51 -0.1

Or see this region's nucleotide sequence