Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_05555 and JDDGAC_05560 are separated by 6 nucleotides JDDGAC_05560 and JDDGAC_05565 overlap by 4 nucleotides JDDGAC_05565 and JDDGAC_05570 are separated by 14 nucleotides JDDGAC_05570 and JDDGAC_05575 are separated by 15 nucleotides JDDGAC_05575 and JDDGAC_05580 overlap by 8 nucleotides JDDGAC_05580 and JDDGAC_05585 overlap by 11 nucleotides
JDDGAC_05555: JDDGAC_05555 - Mu prophage protein, at 974,443 to 974,958
_05555
JDDGAC_05560: JDDGAC_05560 - AsnC family protein, at 974,965 to 975,513
_05560
JDDGAC_05565: JDDGAC_05565 - hypothetical protein, at 975,510 to 975,821
_05565
JDDGAC_05570: JDDGAC_05570 - hypothetical protein, at 975,836 to 976,186
_05570
JDDGAC_05575: JDDGAC_05575 - hypothetical protein, at 976,202 to 976,534
_05575
JDDGAC_05580: JDDGAC_05580 - hypothetical protein, at 976,527 to 976,724
_05580
JDDGAC_05585: JDDGAC_05585 - hypothetical protein, at 976,714 to 977,010
_05585
Position (kb) 975
976 Strain fitness (log2 ratio) -1
0
1
2 at 974.515 kb on - strand, within JDDGAC_05555 at 974.574 kb on - strand, within JDDGAC_05555 at 974.645 kb on + strand, within JDDGAC_05555 at 974.929 kb on + strand at 974.962 kb on - strand at 974.972 kb on + strand at 975.078 kb on + strand, within JDDGAC_05560 at 975.113 kb on + strand, within JDDGAC_05560 at 975.114 kb on - strand, within JDDGAC_05560 at 975.114 kb on - strand, within JDDGAC_05560 at 975.248 kb on - strand, within JDDGAC_05560 at 975.402 kb on + strand, within JDDGAC_05560 at 975.492 kb on - strand at 975.504 kb on - strand at 975.685 kb on - strand, within JDDGAC_05565 at 975.716 kb on + strand, within JDDGAC_05565 at 975.724 kb on - strand, within JDDGAC_05565 at 975.887 kb on - strand, within JDDGAC_05570 at 975.961 kb on + strand, within JDDGAC_05570 at 976.469 kb on - strand, within JDDGAC_05575 at 976.469 kb on - strand, within JDDGAC_05575 at 976.491 kb on + strand, within JDDGAC_05575 at 976.519 kb on + strand at 976.609 kb on + strand, within JDDGAC_05580 at 976.627 kb on - strand, within JDDGAC_05580
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 974,515 - JDDGAC_05555 0.14 -0.8 974,574 - JDDGAC_05555 0.25 -1.4 974,645 + JDDGAC_05555 0.39 -0.5 974,929 + +0.6 974,962 - +1.6 974,972 + -1.3 975,078 + JDDGAC_05560 0.21 -1.3 975,113 + JDDGAC_05560 0.27 +0.2 975,114 - JDDGAC_05560 0.27 +0.4 975,114 - JDDGAC_05560 0.27 -0.2 975,248 - JDDGAC_05560 0.52 +1.0 975,402 + JDDGAC_05560 0.80 +0.7 975,492 - -0.4 975,504 - +0.4 975,685 - JDDGAC_05565 0.56 +1.3 975,716 + JDDGAC_05565 0.66 +0.0 975,724 - JDDGAC_05565 0.69 +2.0 975,887 - JDDGAC_05570 0.15 -0.7 975,961 + JDDGAC_05570 0.36 +0.5 976,469 - JDDGAC_05575 0.80 +0.2 976,469 - JDDGAC_05575 0.80 +0.5 976,491 + JDDGAC_05575 0.87 +1.4 976,519 + -0.2 976,609 + JDDGAC_05580 0.41 +1.5 976,627 - JDDGAC_05580 0.51 -0.1
Or see this region's nucleotide sequence