Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pdeR and yciZ are separated by 147 nucleotides yciZ and yciT are separated by 89 nucleotides yciT and osmB are separated by 268 nucleotides osmB and yciH are separated by 125 nucleotides yciH and pyrF overlap by 1 nucleotides
JDDGAC_05070: pdeR - cyclic di-GMP phosphodiesterase, at 890,461 to 892,446
pdeR
JDDGAC_05075: yciZ - UPF0509 protein YciZ, at 892,594 to 892,767
yciZ
JDDGAC_05080: yciT - DNA-binding transcriptional regulator YciT, at 892,857 to 893,606
yciT
JDDGAC_05085: osmB - osmotically-inducible lipoprotein OsmB, at 893,875 to 894,093
osmB
JDDGAC_05090: yciH - stress response translation initiation inhibitor YciH, at 894,219 to 894,545
yciH
JDDGAC_05095: pyrF - orotidine-5'-phosphate decarboxylase, at 894,545 to 895,342
pyrF
Position (kb) 892
893
894 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 892.456 kb on + strand at 892.456 kb on + strand at 892.456 kb on + strand at 892.461 kb on - strand at 892.486 kb on - strand at 892.487 kb on + strand at 892.578 kb on + strand at 892.698 kb on + strand, within yciZ at 892.836 kb on - strand at 893.065 kb on - strand, within yciT at 893.067 kb on - strand, within yciT at 893.291 kb on + strand, within yciT at 893.291 kb on + strand, within yciT at 893.354 kb on + strand, within yciT at 893.354 kb on + strand, within yciT at 893.576 kb on + strand at 893.816 kb on + strand at 893.825 kb on + strand at 894.216 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 892,456 + -1.1 892,456 + +0.4 892,456 + -0.6 892,461 - +0.8 892,486 - -2.0 892,487 + +2.1 892,578 + +0.6 892,698 + yciZ JDDGAC_05075 0.60 +0.5 892,836 - +1.4 893,065 - yciT JDDGAC_05080 0.28 +0.3 893,067 - yciT JDDGAC_05080 0.28 +0.6 893,291 + yciT JDDGAC_05080 0.58 +1.0 893,291 + yciT JDDGAC_05080 0.58 +1.9 893,354 + yciT JDDGAC_05080 0.66 +1.1 893,354 + yciT JDDGAC_05080 0.66 +3.6 893,576 + -0.2 893,816 + +1.6 893,825 + -0.8 894,216 - +0.2
Or see this region's nucleotide sequence