Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt zntB and ynaN are separated by 13 nucleotides ynaN and dgcM are separated by 193 nucleotides dgcM and smrA are separated by 20 nucleotides smrA and abgR are separated by 329 nucleotides
JDDGAC_04735: zntB - zinc transporter ZntB, at 820,729 to 821,712
zntB
JDDGAC_04740: ynaN - Protein YnaN, at 821,726 to 821,773
ynaN
JDDGAC_04745: dgcM - diguanylate cyclase DgcM, at 821,967 to 823,199
dgcM
JDDGAC_04750: smrA - DNA endonuclease SmrA, at 823,220 to 823,783
smrA
JDDGAC_04760: abgR - LysR family transcriptional regulator, at 824,113 to 825,021
abgR
Position (kb) 821
822
823
824 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 820.980 kb on + strand, within zntB at 820.980 kb on + strand, within zntB at 820.981 kb on - strand, within zntB at 821.115 kb on - strand, within zntB at 821.191 kb on - strand, within zntB at 821.383 kb on - strand, within zntB at 821.383 kb on - strand, within zntB at 821.383 kb on - strand, within zntB at 821.384 kb on + strand, within zntB at 821.384 kb on + strand, within zntB at 821.385 kb on - strand, within zntB at 821.385 kb on - strand, within zntB at 821.385 kb on - strand, within zntB at 821.386 kb on + strand, within zntB at 821.386 kb on + strand, within zntB at 821.387 kb on - strand, within zntB at 821.436 kb on + strand, within zntB at 821.436 kb on + strand, within zntB at 821.515 kb on + strand, within zntB at 821.516 kb on - strand, within zntB at 821.569 kb on + strand, within zntB at 821.570 kb on - strand, within zntB at 821.573 kb on + strand, within zntB at 821.573 kb on + strand, within zntB at 821.574 kb on - strand, within zntB at 821.578 kb on - strand, within zntB at 821.619 kb on + strand at 821.686 kb on - strand at 821.802 kb on - strand at 821.852 kb on - strand at 821.875 kb on - strand at 821.973 kb on - strand at 822.223 kb on + strand, within dgcM at 822.462 kb on + strand, within dgcM at 822.463 kb on - strand, within dgcM at 822.491 kb on + strand, within dgcM at 822.502 kb on + strand, within dgcM at 822.503 kb on - strand, within dgcM at 822.506 kb on + strand, within dgcM at 822.530 kb on + strand, within dgcM at 822.664 kb on + strand, within dgcM at 822.668 kb on + strand, within dgcM at 822.668 kb on + strand, within dgcM at 822.669 kb on - strand, within dgcM at 822.684 kb on - strand, within dgcM at 822.820 kb on - strand, within dgcM at 822.826 kb on + strand, within dgcM at 822.979 kb on + strand, within dgcM at 822.979 kb on + strand, within dgcM at 823.156 kb on - strand at 823.277 kb on - strand, within smrA at 823.277 kb on - strand, within smrA at 823.291 kb on - strand, within smrA at 823.374 kb on + strand, within smrA at 823.374 kb on + strand, within smrA at 823.403 kb on - strand, within smrA at 823.403 kb on - strand, within smrA at 823.787 kb on - strand at 823.845 kb on + strand at 823.845 kb on + strand at 823.867 kb on - strand at 823.867 kb on - strand at 823.867 kb on - strand at 823.933 kb on + strand at 823.933 kb on + strand at 823.938 kb on + strand at 823.938 kb on + strand at 823.939 kb on - strand at 823.939 kb on - strand at 823.944 kb on - strand at 823.946 kb on - strand at 823.983 kb on + strand at 823.983 kb on + strand at 824.069 kb on + strand at 824.184 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 820,980 + zntB JDDGAC_04735 0.26 +1.4 820,980 + zntB JDDGAC_04735 0.26 +0.1 820,981 - zntB JDDGAC_04735 0.26 +1.1 821,115 - zntB JDDGAC_04735 0.39 +1.7 821,191 - zntB JDDGAC_04735 0.47 +0.1 821,383 - zntB JDDGAC_04735 0.66 -1.2 821,383 - zntB JDDGAC_04735 0.66 -0.6 821,383 - zntB JDDGAC_04735 0.66 -1.4 821,384 + zntB JDDGAC_04735 0.67 -0.1 821,384 + zntB JDDGAC_04735 0.67 -0.4 821,385 - zntB JDDGAC_04735 0.67 +3.7 821,385 - zntB JDDGAC_04735 0.67 -1.2 821,385 - zntB JDDGAC_04735 0.67 +2.0 821,386 + zntB JDDGAC_04735 0.67 +0.6 821,386 + zntB JDDGAC_04735 0.67 -0.0 821,387 - zntB JDDGAC_04735 0.67 -1.7 821,436 + zntB JDDGAC_04735 0.72 -0.3 821,436 + zntB JDDGAC_04735 0.72 -1.3 821,515 + zntB JDDGAC_04735 0.80 +1.1 821,516 - zntB JDDGAC_04735 0.80 +1.8 821,569 + zntB JDDGAC_04735 0.85 +0.5 821,570 - zntB JDDGAC_04735 0.85 +1.2 821,573 + zntB JDDGAC_04735 0.86 +3.7 821,573 + zntB JDDGAC_04735 0.86 -0.1 821,574 - zntB JDDGAC_04735 0.86 +0.4 821,578 - zntB JDDGAC_04735 0.86 -0.3 821,619 + +0.9 821,686 - -1.2 821,802 - +0.0 821,852 - -0.2 821,875 - -0.4 821,973 - +1.4 822,223 + dgcM JDDGAC_04745 0.21 +0.1 822,462 + dgcM JDDGAC_04745 0.40 +1.5 822,463 - dgcM JDDGAC_04745 0.40 +0.9 822,491 + dgcM JDDGAC_04745 0.42 -1.6 822,502 + dgcM JDDGAC_04745 0.43 +2.7 822,503 - dgcM JDDGAC_04745 0.43 +1.1 822,506 + dgcM JDDGAC_04745 0.44 +0.2 822,530 + dgcM JDDGAC_04745 0.46 +0.4 822,664 + dgcM JDDGAC_04745 0.57 +0.5 822,668 + dgcM JDDGAC_04745 0.57 +0.5 822,668 + dgcM JDDGAC_04745 0.57 +2.7 822,669 - dgcM JDDGAC_04745 0.57 -0.8 822,684 - dgcM JDDGAC_04745 0.58 -0.5 822,820 - dgcM JDDGAC_04745 0.69 +6.7 822,826 + dgcM JDDGAC_04745 0.70 +0.5 822,979 + dgcM JDDGAC_04745 0.82 +0.6 822,979 + dgcM JDDGAC_04745 0.82 +0.2 823,156 - +0.4 823,277 - smrA JDDGAC_04750 0.10 -0.8 823,277 - smrA JDDGAC_04750 0.10 -0.8 823,291 - smrA JDDGAC_04750 0.13 -0.6 823,374 + smrA JDDGAC_04750 0.27 +1.0 823,374 + smrA JDDGAC_04750 0.27 +0.5 823,403 - smrA JDDGAC_04750 0.32 +1.4 823,403 - smrA JDDGAC_04750 0.32 -0.1 823,787 - +1.3 823,845 + +1.4 823,845 + -0.4 823,867 - -0.3 823,867 - -1.0 823,867 - -0.2 823,933 + +0.5 823,933 + +0.2 823,938 + +1.4 823,938 + -0.9 823,939 - -0.0 823,939 - -0.5 823,944 - -1.9 823,946 - -1.5 823,983 + -2.0 823,983 + -2.0 824,069 + +0.9 824,184 + -0.1
Or see this region's nucleotide sequence