Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_03990 and yncG are separated by 75 nucleotides yncG and ansP are separated by 266 nucleotides ansP and yncE are separated by 114 nucleotides
JDDGAC_03990: JDDGAC_03990 - Uncharacterized protein YncH, at 696,313 to 696,525
_03990
JDDGAC_03995: yncG - Uncharacterized GST-like protein YncG, at 696,601 to 697,218
yncG
JDDGAC_04000: ansP - L-asparagine permease, at 697,485 to 698,984
ansP
JDDGAC_04005: yncE - Uncharacterized protein YncE, at 699,099 to 700,160
yncE
Position (kb) 697
698
699 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7 at 696.727 kb on - strand, within yncG at 696.819 kb on + strand, within yncG at 696.912 kb on + strand, within yncG at 697.212 kb on + strand at 697.213 kb on - strand at 697.250 kb on + strand at 697.308 kb on - strand at 697.347 kb on + strand at 697.360 kb on + strand at 697.406 kb on + strand at 697.406 kb on + strand at 697.449 kb on + strand at 697.490 kb on + strand at 697.588 kb on + strand at 697.633 kb on + strand at 697.741 kb on + strand, within ansP at 697.774 kb on - strand, within ansP at 697.824 kb on + strand, within ansP at 697.878 kb on + strand, within ansP at 697.880 kb on + strand, within ansP at 697.887 kb on + strand, within ansP at 697.940 kb on + strand, within ansP at 698.222 kb on + strand, within ansP at 698.388 kb on + strand, within ansP at 698.388 kb on + strand, within ansP at 698.389 kb on - strand, within ansP at 698.402 kb on + strand, within ansP at 698.454 kb on + strand, within ansP at 698.455 kb on - strand, within ansP at 698.468 kb on + strand, within ansP at 698.571 kb on + strand, within ansP at 698.571 kb on + strand, within ansP at 698.595 kb on + strand, within ansP at 698.706 kb on - strand, within ansP at 698.829 kb on + strand, within ansP at 698.829 kb on + strand, within ansP at 698.829 kb on + strand, within ansP at 698.830 kb on - strand, within ansP at 698.872 kb on + strand at 698.872 kb on + strand at 698.982 kb on + strand at 699.025 kb on - strand at 699.093 kb on + strand at 699.094 kb on - strand at 699.098 kb on - strand at 699.111 kb on - strand at 699.176 kb on - strand at 699.176 kb on - strand at 699.250 kb on + strand, within yncE at 699.251 kb on - strand, within yncE at 699.279 kb on - strand, within yncE at 699.302 kb on - strand, within yncE at 699.563 kb on - strand, within yncE at 699.695 kb on - strand, within yncE
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 696,727 - yncG JDDGAC_03995 0.20 -0.1 696,819 + yncG JDDGAC_03995 0.35 +4.0 696,912 + yncG JDDGAC_03995 0.50 +1.2 697,212 + -0.7 697,213 - -1.2 697,250 + -0.9 697,308 - +1.3 697,347 + -0.3 697,360 + -0.3 697,406 + -0.5 697,406 + +0.1 697,449 + +1.4 697,490 + +1.9 697,588 + +0.3 697,633 + +0.7 697,741 + ansP JDDGAC_04000 0.17 -0.5 697,774 - ansP JDDGAC_04000 0.19 +0.2 697,824 + ansP JDDGAC_04000 0.23 +1.1 697,878 + ansP JDDGAC_04000 0.26 +2.6 697,880 + ansP JDDGAC_04000 0.26 +2.8 697,887 + ansP JDDGAC_04000 0.27 +1.3 697,940 + ansP JDDGAC_04000 0.30 +1.3 698,222 + ansP JDDGAC_04000 0.49 +1.1 698,388 + ansP JDDGAC_04000 0.60 -1.0 698,388 + ansP JDDGAC_04000 0.60 +1.1 698,389 - ansP JDDGAC_04000 0.60 +0.6 698,402 + ansP JDDGAC_04000 0.61 -0.1 698,454 + ansP JDDGAC_04000 0.65 +2.6 698,455 - ansP JDDGAC_04000 0.65 -0.9 698,468 + ansP JDDGAC_04000 0.66 +7.1 698,571 + ansP JDDGAC_04000 0.72 -0.3 698,571 + ansP JDDGAC_04000 0.72 +0.3 698,595 + ansP JDDGAC_04000 0.74 -0.4 698,706 - ansP JDDGAC_04000 0.81 +0.6 698,829 + ansP JDDGAC_04000 0.90 -0.9 698,829 + ansP JDDGAC_04000 0.90 -1.6 698,829 + ansP JDDGAC_04000 0.90 +1.3 698,830 - ansP JDDGAC_04000 0.90 +2.3 698,872 + -1.3 698,872 + +1.5 698,982 + +3.3 699,025 - -1.1 699,093 + -0.8 699,094 - +0.5 699,098 - -0.8 699,111 - -0.4 699,176 - +0.9 699,176 - +4.4 699,250 + yncE JDDGAC_04005 0.14 -0.5 699,251 - yncE JDDGAC_04005 0.14 -0.2 699,279 - yncE JDDGAC_04005 0.17 +1.6 699,302 - yncE JDDGAC_04005 0.19 -0.2 699,563 - yncE JDDGAC_04005 0.44 +3.2 699,695 - yncE JDDGAC_04005 0.56 -0.1
Or see this region's nucleotide sequence