Strain Fitness in Escherichia coli ECRC98 around JDDGAC_03995

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_03990 and yncG are separated by 75 nucleotidesyncG and ansP are separated by 266 nucleotides JDDGAC_03990: JDDGAC_03990 - Uncharacterized protein YncH, at 696,313 to 696,525 _03990 JDDGAC_03995: yncG - Uncharacterized GST-like protein YncG, at 696,601 to 697,218 yncG JDDGAC_04000: ansP - L-asparagine permease, at 697,485 to 698,984 ansP Position (kb) 696 697 698Strain fitness (log2 ratio) -1 0 1 2 3 4at 696.727 kb on - strand, within yncGat 696.819 kb on + strand, within yncGat 696.912 kb on + strand, within yncGat 697.212 kb on + strandat 697.213 kb on - strandat 697.250 kb on + strandat 697.308 kb on - strandat 697.347 kb on + strandat 697.360 kb on + strandat 697.406 kb on + strandat 697.406 kb on + strandat 697.449 kb on + strandat 697.490 kb on + strandat 697.588 kb on + strandat 697.633 kb on + strandat 697.741 kb on + strand, within ansPat 697.774 kb on - strand, within ansPat 697.824 kb on + strand, within ansPat 697.878 kb on + strand, within ansPat 697.880 kb on + strand, within ansPat 697.887 kb on + strand, within ansPat 697.940 kb on + strand, within ansP

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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696,727 - yncG JDDGAC_03995 0.20 -0.1
696,819 + yncG JDDGAC_03995 0.35 +4.0
696,912 + yncG JDDGAC_03995 0.50 +1.2
697,212 + -0.7
697,213 - -1.2
697,250 + -0.9
697,308 - +1.3
697,347 + -0.3
697,360 + -0.3
697,406 + -0.5
697,406 + +0.1
697,449 + +1.4
697,490 + +1.9
697,588 + +0.3
697,633 + +0.7
697,741 + ansP JDDGAC_04000 0.17 -0.5
697,774 - ansP JDDGAC_04000 0.19 +0.2
697,824 + ansP JDDGAC_04000 0.23 +1.1
697,878 + ansP JDDGAC_04000 0.26 +2.6
697,880 + ansP JDDGAC_04000 0.26 +2.8
697,887 + ansP JDDGAC_04000 0.27 +1.3
697,940 + ansP JDDGAC_04000 0.30 +1.3

Or see this region's nucleotide sequence