Strain Fitness in Escherichia coli ECRC98 around JDDGAC_03885

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyddG and ompC2 are separated by 258 nucleotidesompC2 and JDDGAC_03890 are separated by 168 nucleotidesJDDGAC_03890 and JDDGAC_03895 are separated by 122 nucleotides JDDGAC_03880: yddG - aromatic amino acid efflux DMT transporter YddG, at 670,663 to 671,487 yddG JDDGAC_03885: ompC2 - Outer membrane porin C 2, at 671,746 to 672,846 ompC2 JDDGAC_03890: JDDGAC_03890 - IpaH-like protein, at 673,015 to 673,518 _03890 JDDGAC_03895: JDDGAC_03895 - leucine Rich Repeat family protein, at 673,641 to 674,273 _03895 Position (kb) 671 672 673Strain fitness (log2 ratio) -1 0 1at 670.796 kb on - strand, within yddGat 670.904 kb on - strand, within yddGat 671.034 kb on - strand, within yddGat 671.129 kb on + strand, within yddGat 671.490 kb on + strandat 671.911 kb on + strand, within ompC2at 672.082 kb on + strand, within ompC2at 672.130 kb on - strand, within ompC2at 672.184 kb on + strand, within ompC2at 672.208 kb on + strand, within ompC2at 672.453 kb on + strand, within ompC2at 672.506 kb on - strand, within ompC2at 672.637 kb on + strand, within ompC2

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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670,796 - yddG JDDGAC_03880 0.16 +1.1
670,904 - yddG JDDGAC_03880 0.29 +0.6
671,034 - yddG JDDGAC_03880 0.45 +1.1
671,129 + yddG JDDGAC_03880 0.56 -1.6
671,490 + -0.5
671,911 + ompC2 JDDGAC_03885 0.15 +0.3
672,082 + ompC2 JDDGAC_03885 0.31 -1.4
672,130 - ompC2 JDDGAC_03885 0.35 -1.4
672,184 + ompC2 JDDGAC_03885 0.40 -1.2
672,208 + ompC2 JDDGAC_03885 0.42 +0.6
672,453 + ompC2 JDDGAC_03885 0.64 +1.1
672,506 - ompC2 JDDGAC_03885 0.69 -0.3
672,637 + ompC2 JDDGAC_03885 0.81 +1.3

Or see this region's nucleotide sequence