Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydfI and ydfZ are separated by 35 nucleotides ydfZ and ydfH are separated by 176 nucleotides ydfH and ydfG are separated by 88 nucleotides ydfG and dcp are separated by 136 nucleotides
JDDGAC_03510: ydfI - Uncharacterized oxidoreductase YdfI, at 583,715 to 585,175
ydfI
JDDGAC_03515: ydfZ - Putative selenoprotein YdfZ, at 585,211 to 585,414
ydfZ
JDDGAC_03520: ydfH - DNA-binding transcriptional regulator YdfH, at 585,591 to 586,277
ydfH
JDDGAC_03525: ydfG - bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG, at 586,366 to 587,112
ydfG
JDDGAC_03530: dcp - peptidyl-dipeptidase Dcp, at 587,249 to 589,294
dcp
Position (kb) 585
586
587 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 584.776 kb on + strand, within ydfI at 584.777 kb on - strand, within ydfI at 585.004 kb on - strand, within ydfI at 585.010 kb on + strand, within ydfI at 585.116 kb on + strand at 585.213 kb on - strand at 585.274 kb on + strand, within ydfZ at 585.720 kb on - strand, within ydfH at 585.775 kb on + strand, within ydfH at 585.776 kb on - strand, within ydfH at 585.776 kb on - strand, within ydfH at 585.776 kb on - strand, within ydfH at 585.947 kb on - strand, within ydfH at 586.058 kb on - strand, within ydfH at 586.350 kb on - strand at 586.394 kb on + strand at 586.722 kb on + strand, within ydfG at 586.725 kb on + strand, within ydfG at 586.777 kb on - strand, within ydfG at 586.777 kb on - strand, within ydfG at 586.778 kb on + strand, within ydfG at 586.781 kb on - strand, within ydfG at 586.781 kb on - strand, within ydfG at 587.149 kb on + strand at 587.164 kb on - strand at 587.164 kb on - strand at 587.176 kb on + strand at 587.208 kb on + strand at 587.215 kb on - strand at 587.215 kb on - strand at 587.215 kb on - strand at 587.261 kb on - strand at 587.261 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 584,776 + ydfI JDDGAC_03510 0.73 +0.0 584,777 - ydfI JDDGAC_03510 0.73 +0.4 585,004 - ydfI JDDGAC_03510 0.88 +0.8 585,010 + ydfI JDDGAC_03510 0.89 -1.6 585,116 + +0.8 585,213 - -1.2 585,274 + ydfZ JDDGAC_03515 0.31 +2.1 585,720 - ydfH JDDGAC_03520 0.19 +2.8 585,775 + ydfH JDDGAC_03520 0.27 +1.0 585,776 - ydfH JDDGAC_03520 0.27 +1.1 585,776 - ydfH JDDGAC_03520 0.27 +3.6 585,776 - ydfH JDDGAC_03520 0.27 -0.6 585,947 - ydfH JDDGAC_03520 0.52 +0.5 586,058 - ydfH JDDGAC_03520 0.68 +1.5 586,350 - +3.6 586,394 + +3.6 586,722 + ydfG JDDGAC_03525 0.48 -0.3 586,725 + ydfG JDDGAC_03525 0.48 +3.1 586,777 - ydfG JDDGAC_03525 0.55 +0.9 586,777 - ydfG JDDGAC_03525 0.55 +2.1 586,778 + ydfG JDDGAC_03525 0.55 +2.6 586,781 - ydfG JDDGAC_03525 0.56 -0.3 586,781 - ydfG JDDGAC_03525 0.56 +0.6 587,149 + -1.9 587,164 - +2.1 587,164 - +0.5 587,176 + +2.2 587,208 + -0.2 587,215 - -0.3 587,215 - +0.3 587,215 - +0.0 587,261 - +0.2 587,261 - +0.5
Or see this region's nucleotide sequence