Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_03180 and JDDGAC_03185 are separated by 34 nucleotides JDDGAC_03185 and JDDGAC_03190 are separated by 15 nucleotides JDDGAC_03190 and JDDGAC_03195 overlap by 4 nucleotides JDDGAC_03195 and JDDGAC_03200 overlap by 4 nucleotides JDDGAC_03200 and JDDGAC_03205 are separated by 10 nucleotides JDDGAC_03205 and JDDGAC_03210 overlap by 23 nucleotides
JDDGAC_03180: JDDGAC_03180 - replication protein, at 540,699 to 541,121
_03180
JDDGAC_03185: JDDGAC_03185 - DUF1627 domain-containing protein, at 541,156 to 541,926
_03185
JDDGAC_03190: JDDGAC_03190 - DUF977 domain-containing protein, at 541,942 to 542,334
_03190
JDDGAC_03195: JDDGAC_03195 - DUF4406 domain-containing protein, at 542,331 to 542,627
_03195
JDDGAC_03200: JDDGAC_03200 - hypothetical protein, at 542,624 to 542,875
_03200
JDDGAC_03205: JDDGAC_03205 - Ead/Ea22-like family protein, at 542,886 to 542,999
_03205
JDDGAC_03210: JDDGAC_03210 - hypothetical protein, at 542,977 to 543,333
_03210
Position (kb) 541
542
543 Strain fitness (log2 ratio) -1
0
1
2 at 540.995 kb on + strand, within JDDGAC_03180 at 540.995 kb on + strand, within JDDGAC_03180 at 541.021 kb on + strand, within JDDGAC_03180 at 542.044 kb on - strand, within JDDGAC_03190 at 542.149 kb on + strand, within JDDGAC_03190 at 542.230 kb on + strand, within JDDGAC_03190 at 542.230 kb on + strand, within JDDGAC_03190 at 542.302 kb on + strand at 542.432 kb on + strand, within JDDGAC_03195 at 542.432 kb on + strand, within JDDGAC_03195 at 542.481 kb on + strand, within JDDGAC_03195 at 542.489 kb on + strand, within JDDGAC_03195 at 542.489 kb on + strand, within JDDGAC_03195 at 542.489 kb on + strand, within JDDGAC_03195 at 542.490 kb on - strand, within JDDGAC_03195 at 542.527 kb on - strand, within JDDGAC_03195 at 542.785 kb on + strand, within JDDGAC_03200 at 542.795 kb on - strand, within JDDGAC_03200 at 543.224 kb on + strand, within JDDGAC_03210
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 540,995 + JDDGAC_03180 0.70 +2.1 540,995 + JDDGAC_03180 0.70 +0.3 541,021 + JDDGAC_03180 0.76 +2.1 542,044 - JDDGAC_03190 0.26 +2.4 542,149 + JDDGAC_03190 0.53 +0.5 542,230 + JDDGAC_03190 0.73 +0.9 542,230 + JDDGAC_03190 0.73 +0.8 542,302 + -0.6 542,432 + JDDGAC_03195 0.34 +0.2 542,432 + JDDGAC_03195 0.34 +0.7 542,481 + JDDGAC_03195 0.51 -0.7 542,489 + JDDGAC_03195 0.53 +0.6 542,489 + JDDGAC_03195 0.53 +0.3 542,489 + JDDGAC_03195 0.53 +2.3 542,490 - JDDGAC_03195 0.54 +0.6 542,527 - JDDGAC_03195 0.66 +1.8 542,785 + JDDGAC_03200 0.64 +0.2 542,795 - JDDGAC_03200 0.68 -0.7 543,224 + JDDGAC_03210 0.69 +0.9
Or see this region's nucleotide sequence