Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt uidC and JDDGAC_02220 are separated by 14 nucleotides JDDGAC_02220 and ydgA are separated by 44 nucleotides ydgA and manA are separated by 100 nucleotides
JDDGAC_02215: uidC - glucuronide uptake porin UidC, at 398,083 to 399,111
uidC
JDDGAC_02220: JDDGAC_02220 - Putative outer membrane porin protein, at 399,126 to 399,347
_02220
JDDGAC_02225: ydgA - Protein YdgA, at 399,392 to 400,900
ydgA
JDDGAC_02230: manA - mannose-6-phosphate isomerase, at 401,001 to 402,176
manA
Position (kb) 399
400
401 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6 at 398.475 kb on + strand, within uidC at 398.529 kb on + strand, within uidC at 398.529 kb on + strand, within uidC at 398.662 kb on + strand, within uidC at 398.883 kb on + strand, within uidC at 398.954 kb on + strand, within uidC at 398.971 kb on + strand, within uidC at 399.032 kb on + strand at 399.105 kb on - strand at 399.191 kb on + strand, within JDDGAC_02220 at 399.198 kb on + strand, within JDDGAC_02220 at 399.394 kb on - strand at 399.449 kb on - strand at 399.492 kb on - strand at 399.508 kb on - strand at 399.830 kb on - strand, within ydgA at 399.960 kb on + strand, within ydgA at 400.082 kb on - strand, within ydgA at 400.829 kb on - strand at 400.830 kb on + strand at 400.951 kb on - strand at 400.963 kb on + strand at 400.964 kb on - strand at 400.970 kb on - strand at 401.014 kb on + strand at 401.015 kb on - strand at 401.015 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 398,475 + uidC JDDGAC_02215 0.38 +1.2 398,529 + uidC JDDGAC_02215 0.43 +1.7 398,529 + uidC JDDGAC_02215 0.43 +1.0 398,662 + uidC JDDGAC_02215 0.56 +1.1 398,883 + uidC JDDGAC_02215 0.78 -0.6 398,954 + uidC JDDGAC_02215 0.85 +0.3 398,971 + uidC JDDGAC_02215 0.86 -0.4 399,032 + +1.8 399,105 - -1.2 399,191 + JDDGAC_02220 0.29 +1.1 399,198 + JDDGAC_02220 0.32 -0.4 399,394 - -0.6 399,449 - -1.1 399,492 - +0.8 399,508 - -0.9 399,830 - ydgA JDDGAC_02225 0.29 +2.1 399,960 + ydgA JDDGAC_02225 0.38 -0.1 400,082 - ydgA JDDGAC_02225 0.46 +1.6 400,829 - -0.1 400,830 + +1.4 400,951 - +0.8 400,963 + -0.9 400,964 - -1.7 400,970 - +1.1 401,014 + +4.9 401,015 - +0.1 401,015 - +5.8
Or see this region's nucleotide sequence