Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mdtK and ribE are separated by 214 nucleotides ribE and cfa are separated by 39 nucleotides cfa and punC are separated by 290 nucleotides
JDDGAC_01950: mdtK - multidrug efflux MATE transporter MdtK, at 346,012 to 347,385
mdtK
JDDGAC_01955: ribE - riboflavin synthase, at 347,600 to 348,241
ribE
JDDGAC_01960: cfa - cyclopropane fatty acyl phospholipid synthase, at 348,281 to 349,429
cfa
JDDGAC_01965: punC - purine nucleoside transporter PunC, at 349,720 to 350,931
punC
Position (kb) 348
349
350 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 347.374 kb on - strand at 347.375 kb on + strand at 347.398 kb on + strand at 347.404 kb on + strand at 347.408 kb on + strand at 347.408 kb on + strand at 347.408 kb on + strand at 347.408 kb on + strand at 347.409 kb on - strand at 347.409 kb on - strand at 347.409 kb on - strand at 347.478 kb on - strand at 347.521 kb on - strand at 347.554 kb on + strand at 347.554 kb on + strand at 348.382 kb on - strand at 348.385 kb on - strand at 348.388 kb on + strand at 348.389 kb on - strand at 348.497 kb on - strand, within cfa at 348.680 kb on - strand, within cfa at 348.858 kb on - strand, within cfa at 349.138 kb on + strand, within cfa at 349.413 kb on - strand at 349.415 kb on - strand at 349.536 kb on - strand at 349.536 kb on - strand at 349.580 kb on - strand at 349.619 kb on - strand at 349.652 kb on + strand at 349.653 kb on - strand at 349.707 kb on - strand at 349.707 kb on - strand at 349.826 kb on - strand at 349.883 kb on - strand, within punC at 349.987 kb on - strand, within punC at 349.987 kb on - strand, within punC at 349.992 kb on - strand, within punC at 349.992 kb on - strand, within punC at 350.123 kb on - strand, within punC at 350.123 kb on - strand, within punC at 350.207 kb on - strand, within punC at 350.229 kb on - strand, within punC at 350.298 kb on - strand, within punC at 350.326 kb on - strand, within punC
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 347,374 - -1.1 347,375 + +0.9 347,398 + -0.7 347,404 + +2.0 347,408 + -0.2 347,408 + +0.6 347,408 + -0.9 347,408 + +1.0 347,409 - +0.8 347,409 - +0.2 347,409 - +0.5 347,478 - +0.7 347,521 - +0.6 347,554 + +0.7 347,554 + +2.9 348,382 - -1.0 348,385 - +1.1 348,388 + -0.1 348,389 - +1.2 348,497 - cfa JDDGAC_01960 0.19 +3.6 348,680 - cfa JDDGAC_01960 0.35 -0.8 348,858 - cfa JDDGAC_01960 0.50 +0.4 349,138 + cfa JDDGAC_01960 0.75 +2.1 349,413 - -0.6 349,415 - -1.4 349,536 - -0.2 349,536 - +1.9 349,580 - -0.4 349,619 - +0.7 349,652 + -0.1 349,653 - +0.4 349,707 - -0.6 349,707 - -0.2 349,826 - +0.0 349,883 - punC JDDGAC_01965 0.13 -0.9 349,987 - punC JDDGAC_01965 0.22 -1.3 349,987 - punC JDDGAC_01965 0.22 +0.3 349,992 - punC JDDGAC_01965 0.22 +0.2 349,992 - punC JDDGAC_01965 0.22 -1.0 350,123 - punC JDDGAC_01965 0.33 +0.5 350,123 - punC JDDGAC_01965 0.33 +0.4 350,207 - punC JDDGAC_01965 0.40 +1.1 350,229 - punC JDDGAC_01965 0.42 -0.5 350,298 - punC JDDGAC_01965 0.48 -2.2 350,326 - punC JDDGAC_01965 0.50 -0.1
Or see this region's nucleotide sequence