Strain Fitness in Escherichia coli ECRC98 around JDDGAC_01780

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntaroD and ydiB are separated by 30 nucleotidesydiB and uhpC are separated by 11 nucleotidesuhpC and ydiM are separated by 226 nucleotides JDDGAC_01770: aroD - 3-dehydroquinate dehydratase, at 314,084 to 314,842 aroD JDDGAC_01775: ydiB - quinate/shikimate dehydrogenase, at 314,873 to 315,739 ydiB JDDGAC_01780: uhpC - MFS transporter, at 315,751 to 317,016 uhpC JDDGAC_01785: ydiM - Inner membrane transport protein YdiM, at 317,243 to 318,457 ydiM Position (kb) 315 316 317 318Strain fitness (log2 ratio) -2 -1 0 1 2at 315.040 kb on - strand, within ydiBat 315.040 kb on - strand, within ydiBat 315.266 kb on - strand, within ydiBat 315.287 kb on - strand, within ydiBat 315.428 kb on - strand, within ydiBat 315.625 kb on - strand, within ydiBat 315.629 kb on - strand, within ydiBat 315.766 kb on - strandat 316.562 kb on + strand, within uhpCat 316.601 kb on - strand, within uhpCat 316.685 kb on - strand, within uhpCat 316.685 kb on - strand, within uhpCat 316.715 kb on - strand, within uhpCat 316.965 kb on + strandat 317.058 kb on + strandat 317.084 kb on + strandat 317.113 kb on - strandat 317.362 kb on + strandat 317.363 kb on - strandat 317.439 kb on + strand, within ydiMat 317.439 kb on + strand, within ydiMat 317.730 kb on + strand, within ydiMat 317.731 kb on - strand, within ydiMat 317.804 kb on - strand, within ydiMat 317.812 kb on - strand, within ydiMat 317.819 kb on - strand, within ydiMat 317.820 kb on + strand, within ydiMat 317.828 kb on + strand, within ydiM

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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315,040 - ydiB JDDGAC_01775 0.19 -1.0
315,040 - ydiB JDDGAC_01775 0.19 +1.0
315,266 - ydiB JDDGAC_01775 0.45 +0.4
315,287 - ydiB JDDGAC_01775 0.48 -2.5
315,428 - ydiB JDDGAC_01775 0.64 +1.0
315,625 - ydiB JDDGAC_01775 0.87 -0.2
315,629 - ydiB JDDGAC_01775 0.87 +0.1
315,766 - +0.3
316,562 + uhpC JDDGAC_01780 0.64 +1.4
316,601 - uhpC JDDGAC_01780 0.67 -0.2
316,685 - uhpC JDDGAC_01780 0.74 -0.5
316,685 - uhpC JDDGAC_01780 0.74 +0.4
316,715 - uhpC JDDGAC_01780 0.76 -2.4
316,965 + +1.2
317,058 + +1.3
317,084 + +1.8
317,113 - -1.3
317,362 + +0.6
317,363 - +1.2
317,439 + ydiM JDDGAC_01785 0.16 +0.4
317,439 + ydiM JDDGAC_01785 0.16 +2.0
317,730 + ydiM JDDGAC_01785 0.40 +1.7
317,731 - ydiM JDDGAC_01785 0.40 -1.3
317,804 - ydiM JDDGAC_01785 0.46 +0.1
317,812 - ydiM JDDGAC_01785 0.47 +0.9
317,819 - ydiM JDDGAC_01785 0.47 +2.0
317,820 + ydiM JDDGAC_01785 0.47 +0.5
317,828 + ydiM JDDGAC_01785 0.48 -0.9

Or see this region's nucleotide sequence