Strain Fitness in Escherichia coli ECRC98 around JDDGAC_01730

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfadK and ydiT are separated by 56 nucleotidesydiT and ydiS overlap by 4 nucleotides JDDGAC_01725: fadK - medium-chain fatty-acid--CoA ligase, at 304,849 to 306,495 fadK JDDGAC_01730: ydiT - Ferredoxin-like protein YdiT, at 306,552 to 306,845 ydiT JDDGAC_01735: ydiS - putative electron transfer flavoprotein-quinone oxidoreductase YdiS, at 306,842 to 308,131 ydiS Position (kb) 306 307Strain fitness (log2 ratio) -2 -1 0 1 2 3at 305.714 kb on - strand, within fadKat 305.738 kb on - strand, within fadKat 305.872 kb on - strand, within fadKat 305.910 kb on + strand, within fadKat 305.926 kb on + strand, within fadKat 305.926 kb on + strand, within fadKat 306.043 kb on + strand, within fadKat 306.076 kb on + strand, within fadKat 306.138 kb on + strand, within fadKat 306.139 kb on - strand, within fadKat 306.139 kb on - strand, within fadKat 306.142 kb on - strand, within fadKat 306.142 kb on - strand, within fadKat 306.222 kb on - strand, within fadKat 306.262 kb on + strand, within fadKat 306.339 kb on - strandat 306.344 kb on + strandat 306.345 kb on - strandat 306.481 kb on + strandat 306.572 kb on + strandat 306.612 kb on - strand, within ydiTat 306.696 kb on - strand, within ydiTat 306.768 kb on - strand, within ydiTat 306.862 kb on + strandat 307.052 kb on - strand, within ydiSat 307.451 kb on - strand, within ydiSat 307.526 kb on - strand, within ydiSat 307.528 kb on + strand, within ydiSat 307.590 kb on + strand, within ydiSat 307.685 kb on - strand, within ydiSat 307.811 kb on - strand, within ydiSat 307.823 kb on - strand, within ydiSat 307.824 kb on + strand, within ydiS

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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305,714 - fadK JDDGAC_01725 0.53 +0.2
305,738 - fadK JDDGAC_01725 0.54 -2.5
305,872 - fadK JDDGAC_01725 0.62 -0.7
305,910 + fadK JDDGAC_01725 0.64 -1.6
305,926 + fadK JDDGAC_01725 0.65 -1.2
305,926 + fadK JDDGAC_01725 0.65 +0.4
306,043 + fadK JDDGAC_01725 0.72 -2.0
306,076 + fadK JDDGAC_01725 0.74 +1.5
306,138 + fadK JDDGAC_01725 0.78 -0.1
306,139 - fadK JDDGAC_01725 0.78 -2.5
306,139 - fadK JDDGAC_01725 0.78 +1.2
306,142 - fadK JDDGAC_01725 0.79 +1.5
306,142 - fadK JDDGAC_01725 0.79 +0.4
306,222 - fadK JDDGAC_01725 0.83 +0.1
306,262 + fadK JDDGAC_01725 0.86 -1.0
306,339 - -0.3
306,344 + -0.1
306,345 - +3.5
306,481 + +0.6
306,572 + +1.5
306,612 - ydiT JDDGAC_01730 0.20 +0.5
306,696 - ydiT JDDGAC_01730 0.49 +0.0
306,768 - ydiT JDDGAC_01730 0.73 +2.2
306,862 + +0.5
307,052 - ydiS JDDGAC_01735 0.16 -0.3
307,451 - ydiS JDDGAC_01735 0.47 -0.5
307,526 - ydiS JDDGAC_01735 0.53 +2.1
307,528 + ydiS JDDGAC_01735 0.53 +0.5
307,590 + ydiS JDDGAC_01735 0.58 -1.7
307,685 - ydiS JDDGAC_01735 0.65 -0.9
307,811 - ydiS JDDGAC_01735 0.75 +0.5
307,823 - ydiS JDDGAC_01735 0.76 +0.4
307,824 + ydiS JDDGAC_01735 0.76 -0.9

Or see this region's nucleotide sequence