Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yebO and cspE are separated by 824 nucleotides cspE and rlmA are separated by 165 nucleotides rlmA and mntP overlap by 4 nucleotides
JDDGAC_01065: yebO - Uncharacterized protein YebO, at 178,862 to 179,149
yebO
JDDGAC_01070: cspE - transcription antiterminator/RNA stability regulator CspE, at 179,974 to 180,183
cspE
JDDGAC_01075: rlmA - 23S rRNA (guanine(745)-N(1))-methyltransferase, at 180,349 to 181,158
rlmA
JDDGAC_01080: mntP - manganese efflux pump MntP, at 181,155 to 181,721
mntP
Position (kb) 179
180
181 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 179.556 kb on + strand at 179.560 kb on + strand at 179.597 kb on - strand at 179.597 kb on - strand at 179.665 kb on + strand at 179.687 kb on + strand at 179.713 kb on + strand at 179.817 kb on + strand at 179.890 kb on + strand at 179.890 kb on + strand at 179.892 kb on + strand at 179.892 kb on + strand at 179.892 kb on + strand at 179.910 kb on + strand at 179.928 kb on + strand at 179.928 kb on + strand at 179.933 kb on + strand at 179.933 kb on + strand at 179.959 kb on + strand at 179.985 kb on + strand at 180.033 kb on + strand, within cspE at 180.065 kb on + strand, within cspE at 180.171 kb on - strand at 180.171 kb on - strand at 180.177 kb on + strand at 180.177 kb on + strand at 180.177 kb on + strand at 180.177 kb on + strand at 180.178 kb on - strand at 180.210 kb on + strand at 180.210 kb on + strand at 180.258 kb on + strand at 180.329 kb on - strand at 180.331 kb on + strand at 180.403 kb on + strand at 180.403 kb on + strand at 180.403 kb on + strand at 180.404 kb on - strand at 180.404 kb on - strand at 180.406 kb on - strand at 180.406 kb on - strand at 180.406 kb on - strand at 180.474 kb on + strand, within rlmA at 180.475 kb on - strand, within rlmA at 180.533 kb on + strand, within rlmA at 180.533 kb on + strand, within rlmA at 180.806 kb on + strand, within rlmA at 180.806 kb on + strand, within rlmA at 180.806 kb on + strand, within rlmA at 180.810 kb on + strand, within rlmA at 180.810 kb on + strand, within rlmA at 180.811 kb on - strand, within rlmA at 180.839 kb on + strand, within rlmA at 181.153 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 179,556 + -0.7 179,560 + +0.9 179,597 - -0.1 179,597 - -0.2 179,665 + -0.1 179,687 + -3.2 179,713 + +1.1 179,817 + -0.9 179,890 + -0.1 179,890 + -1.2 179,892 + +1.0 179,892 + +0.4 179,892 + -2.6 179,910 + -1.7 179,928 + -1.2 179,928 + -0.2 179,933 + -1.2 179,933 + -1.2 179,959 + +0.2 179,985 + -1.9 180,033 + cspE JDDGAC_01070 0.28 -0.5 180,065 + cspE JDDGAC_01070 0.43 -2.0 180,171 - -1.5 180,171 - +0.1 180,177 + -0.3 180,177 + -0.2 180,177 + +1.5 180,177 + -0.4 180,178 - -1.6 180,210 + -0.3 180,210 + -1.1 180,258 + -0.5 180,329 - -3.0 180,331 + +0.3 180,403 + -0.7 180,403 + -1.3 180,403 + +0.7 180,404 - +1.0 180,404 - +0.2 180,406 - +0.3 180,406 - +0.1 180,406 - -0.1 180,474 + rlmA JDDGAC_01075 0.15 -0.8 180,475 - rlmA JDDGAC_01075 0.16 -1.6 180,533 + rlmA JDDGAC_01075 0.23 +0.6 180,533 + rlmA JDDGAC_01075 0.23 +1.1 180,806 + rlmA JDDGAC_01075 0.56 +1.3 180,806 + rlmA JDDGAC_01075 0.56 -0.3 180,806 + rlmA JDDGAC_01075 0.56 -0.4 180,810 + rlmA JDDGAC_01075 0.57 +1.7 180,810 + rlmA JDDGAC_01075 0.57 +2.0 180,811 - rlmA JDDGAC_01075 0.57 -0.5 180,839 + rlmA JDDGAC_01075 0.60 +0.8 181,153 + +0.8
Or see this region's nucleotide sequence