Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yebQ and kdgR are separated by 176 nucleotides kdgR and yobH are separated by 143 nucleotides yobH and yebO are separated by 377 nucleotides
JDDGAC_01050: yebQ - Uncharacterized transporter YebQ, at 175,760 to 177,133
yebQ
JDDGAC_01055: kdgR - DNA-binding transcriptional regulator KdgR, at 177,310 to 178,101
kdgR
JDDGAC_01060: yobH - Uncharacterized protein YobH, at 178,245 to 178,484
yobH
JDDGAC_01065: yebO - Uncharacterized protein YebO, at 178,862 to 179,149
yebO
Position (kb) 177
178
179 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 176.315 kb on - strand, within yebQ at 176.414 kb on + strand, within yebQ at 176.435 kb on + strand, within yebQ at 176.537 kb on - strand, within yebQ at 176.703 kb on - strand, within yebQ at 176.796 kb on - strand, within yebQ at 176.817 kb on - strand, within yebQ at 176.883 kb on + strand, within yebQ at 176.888 kb on - strand, within yebQ at 176.906 kb on - strand, within yebQ at 177.077 kb on + strand at 177.142 kb on + strand at 177.178 kb on + strand at 177.188 kb on - strand at 177.330 kb on + strand at 177.347 kb on + strand at 177.464 kb on + strand, within kdgR at 177.487 kb on + strand, within kdgR at 177.660 kb on + strand, within kdgR at 177.707 kb on - strand, within kdgR at 177.736 kb on + strand, within kdgR at 177.736 kb on + strand, within kdgR at 177.814 kb on + strand, within kdgR at 177.904 kb on - strand, within kdgR at 178.023 kb on - strand at 178.030 kb on + strand at 178.030 kb on + strand at 178.030 kb on + strand at 178.031 kb on - strand at 178.149 kb on - strand at 178.149 kb on - strand at 178.200 kb on + strand at 178.201 kb on - strand at 178.237 kb on + strand at 178.317 kb on - strand, within yobH at 178.361 kb on - strand, within yobH at 178.361 kb on - strand, within yobH at 178.365 kb on - strand, within yobH at 178.378 kb on - strand, within yobH at 178.431 kb on + strand, within yobH at 178.578 kb on - strand at 178.619 kb on + strand at 178.624 kb on + strand at 178.624 kb on + strand at 178.624 kb on + strand at 178.831 kb on + strand at 178.912 kb on - strand, within yebO
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 176,315 - yebQ JDDGAC_01050 0.40 +2.0 176,414 + yebQ JDDGAC_01050 0.48 +0.2 176,435 + yebQ JDDGAC_01050 0.49 -0.3 176,537 - yebQ JDDGAC_01050 0.57 -1.7 176,703 - yebQ JDDGAC_01050 0.69 -0.4 176,796 - yebQ JDDGAC_01050 0.75 +0.2 176,817 - yebQ JDDGAC_01050 0.77 +2.0 176,883 + yebQ JDDGAC_01050 0.82 +0.7 176,888 - yebQ JDDGAC_01050 0.82 +1.3 176,906 - yebQ JDDGAC_01050 0.83 +2.1 177,077 + -0.3 177,142 + +0.2 177,178 + +0.8 177,188 - -0.1 177,330 + -0.1 177,347 + -1.2 177,464 + kdgR JDDGAC_01055 0.19 -0.3 177,487 + kdgR JDDGAC_01055 0.22 -0.9 177,660 + kdgR JDDGAC_01055 0.44 +0.9 177,707 - kdgR JDDGAC_01055 0.50 +2.9 177,736 + kdgR JDDGAC_01055 0.54 -0.7 177,736 + kdgR JDDGAC_01055 0.54 -2.0 177,814 + kdgR JDDGAC_01055 0.64 +0.1 177,904 - kdgR JDDGAC_01055 0.75 +4.2 178,023 - -1.4 178,030 + +0.7 178,030 + -0.2 178,030 + -1.1 178,031 - -2.2 178,149 - -1.1 178,149 - +0.7 178,200 + -0.3 178,201 - +0.6 178,237 + +0.9 178,317 - yobH JDDGAC_01060 0.30 -1.3 178,361 - yobH JDDGAC_01060 0.48 +0.1 178,361 - yobH JDDGAC_01060 0.48 -0.8 178,365 - yobH JDDGAC_01060 0.50 +1.0 178,378 - yobH JDDGAC_01060 0.55 +0.5 178,431 + yobH JDDGAC_01060 0.78 +1.6 178,578 - -0.9 178,619 + -0.4 178,624 + +1.0 178,624 + +1.3 178,624 + -0.1 178,831 + -0.6 178,912 - yebO JDDGAC_01065 0.17 -1.0
Or see this region's nucleotide sequence