Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt xerD and JDDGAC_29355 overlap by 1 nucleotides JDDGAC_29355 and JDDGAC_29360 are separated by 58 nucleotides
JDDGAC_29350: xerD - integrase, at 5,604,664 to 5,605,686
xerD
JDDGAC_29355: JDDGAC_29355 - DUF4224 domain-containing protein, at 5,605,686 to 5,605,889
_29355
JDDGAC_29360: JDDGAC_29360 - exonuclease, at 5,605,948 to 5,608,419
_29360
Position (kb) 5605
5606 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5604.740 kb on + strand at 5604.892 kb on + strand, within xerD at 5604.921 kb on + strand, within xerD at 5604.921 kb on + strand, within xerD at 5604.921 kb on + strand, within xerD at 5604.921 kb on + strand, within xerD at 5604.922 kb on - strand, within xerD at 5604.922 kb on - strand, within xerD at 5604.922 kb on - strand, within xerD at 5604.922 kb on - strand, within xerD at 5604.923 kb on + strand, within xerD at 5604.949 kb on + strand, within xerD at 5604.949 kb on + strand, within xerD at 5604.950 kb on - strand, within xerD at 5604.950 kb on - strand, within xerD at 5604.953 kb on + strand, within xerD at 5604.954 kb on - strand, within xerD at 5604.968 kb on - strand, within xerD at 5605.091 kb on - strand, within xerD at 5605.121 kb on + strand, within xerD at 5605.122 kb on - strand, within xerD at 5605.165 kb on + strand, within xerD at 5605.168 kb on + strand, within xerD at 5605.193 kb on - strand, within xerD at 5605.269 kb on - strand, within xerD at 5605.278 kb on + strand, within xerD at 5605.278 kb on + strand, within xerD at 5605.278 kb on + strand, within xerD at 5605.279 kb on - strand, within xerD at 5605.279 kb on - strand, within xerD at 5605.279 kb on - strand, within xerD at 5605.294 kb on - strand, within xerD at 5605.324 kb on - strand, within xerD at 5605.324 kb on - strand, within xerD at 5605.453 kb on - strand, within xerD at 5605.453 kb on - strand, within xerD at 5605.463 kb on + strand, within xerD at 5605.463 kb on + strand, within xerD at 5605.467 kb on - strand, within xerD at 5605.582 kb on + strand, within xerD at 5605.583 kb on - strand, within xerD at 5605.583 kb on - strand, within xerD at 5605.616 kb on - strand at 5605.620 kb on + strand at 5605.620 kb on + strand at 5605.621 kb on - strand at 5605.622 kb on + strand at 5605.622 kb on + strand at 5605.622 kb on + strand at 5605.636 kb on + strand at 5605.637 kb on - strand at 5605.743 kb on - strand, within JDDGAC_29355 at 5605.776 kb on - strand, within JDDGAC_29355 at 5605.786 kb on + strand, within JDDGAC_29355 at 5605.835 kb on - strand, within JDDGAC_29355 at 5605.878 kb on + strand at 5605.889 kb on + strand at 5605.889 kb on + strand at 5605.893 kb on + strand at 5605.893 kb on + strand at 5605.894 kb on - strand at 5605.894 kb on - strand at 5605.894 kb on - strand at 5605.895 kb on + strand at 5605.895 kb on + strand at 5605.916 kb on + strand at 5605.916 kb on + strand at 5605.917 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 5,604,740 + -2.4 5,604,892 + xerD JDDGAC_29350 0.22 -0.1 5,604,921 + xerD JDDGAC_29350 0.25 -1.5 5,604,921 + xerD JDDGAC_29350 0.25 +1.9 5,604,921 + xerD JDDGAC_29350 0.25 +2.4 5,604,921 + xerD JDDGAC_29350 0.25 -0.3 5,604,922 - xerD JDDGAC_29350 0.25 -1.4 5,604,922 - xerD JDDGAC_29350 0.25 +1.1 5,604,922 - xerD JDDGAC_29350 0.25 -0.8 5,604,922 - xerD JDDGAC_29350 0.25 +0.3 5,604,923 + xerD JDDGAC_29350 0.25 +0.3 5,604,949 + xerD JDDGAC_29350 0.28 +0.7 5,604,949 + xerD JDDGAC_29350 0.28 +0.4 5,604,950 - xerD JDDGAC_29350 0.28 -0.3 5,604,950 - xerD JDDGAC_29350 0.28 +0.9 5,604,953 + xerD JDDGAC_29350 0.28 +1.6 5,604,954 - xerD JDDGAC_29350 0.28 -0.3 5,604,968 - xerD JDDGAC_29350 0.30 -0.8 5,605,091 - xerD JDDGAC_29350 0.42 -0.7 5,605,121 + xerD JDDGAC_29350 0.45 -1.0 5,605,122 - xerD JDDGAC_29350 0.45 -0.6 5,605,165 + xerD JDDGAC_29350 0.49 -0.0 5,605,168 + xerD JDDGAC_29350 0.49 +1.1 5,605,193 - xerD JDDGAC_29350 0.52 -1.6 5,605,269 - xerD JDDGAC_29350 0.59 -1.3 5,605,278 + xerD JDDGAC_29350 0.60 -1.2 5,605,278 + xerD JDDGAC_29350 0.60 +1.3 5,605,278 + xerD JDDGAC_29350 0.60 -0.0 5,605,279 - xerD JDDGAC_29350 0.60 +0.7 5,605,279 - xerD JDDGAC_29350 0.60 -2.7 5,605,279 - xerD JDDGAC_29350 0.60 -1.5 5,605,294 - xerD JDDGAC_29350 0.62 +0.9 5,605,324 - xerD JDDGAC_29350 0.65 +0.2 5,605,324 - xerD JDDGAC_29350 0.65 +1.4 5,605,453 - xerD JDDGAC_29350 0.77 -2.3 5,605,453 - xerD JDDGAC_29350 0.77 +0.4 5,605,463 + xerD JDDGAC_29350 0.78 -0.1 5,605,463 + xerD JDDGAC_29350 0.78 -0.6 5,605,467 - xerD JDDGAC_29350 0.78 -0.0 5,605,582 + xerD JDDGAC_29350 0.90 +0.1 5,605,583 - xerD JDDGAC_29350 0.90 +1.9 5,605,583 - xerD JDDGAC_29350 0.90 +0.9 5,605,616 - -0.5 5,605,620 + -1.0 5,605,620 + +3.2 5,605,621 - +1.4 5,605,622 + +0.4 5,605,622 + +0.5 5,605,622 + +0.2 5,605,636 + -0.6 5,605,637 - -0.8 5,605,743 - JDDGAC_29355 0.28 -0.6 5,605,776 - JDDGAC_29355 0.44 -2.1 5,605,786 + JDDGAC_29355 0.49 -1.4 5,605,835 - JDDGAC_29355 0.73 +0.8 5,605,878 + +0.0 5,605,889 + +1.9 5,605,889 + +1.9 5,605,893 + -0.8 5,605,893 + -1.0 5,605,894 - -0.3 5,605,894 - -1.1 5,605,894 - -0.1 5,605,895 + +2.0 5,605,895 + +0.3 5,605,916 + -0.5 5,605,916 + +0.6 5,605,917 - +2.3
Or see this region's nucleotide sequence