Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_27865 and JDDGAC_27870 are separated by 455 nucleotides JDDGAC_27870 and gpA1 overlap by 4 nucleotides gpA1 and JDDGAC_27880 overlap by 4 nucleotides JDDGAC_27880 and JDDGAC_27885 overlap by 1 nucleotides
JDDGAC_27865: JDDGAC_27865 - lysis protein, at 5,338,662 to 5,339,129
_27865
JDDGAC_27870: JDDGAC_27870 - terminase, at 5,339,585 to 5,340,061
_27870
JDDGAC_27875: gpA1 - terminase, at 5,340,058 to 5,342,181
gpA1
JDDGAC_27880: JDDGAC_27880 - Phage protein, at 5,342,178 to 5,342,390
_27880
JDDGAC_27885: JDDGAC_27885 - phage portal protein, at 5,342,390 to 5,343,892
_27885
Position (kb) 5340
5341
5342
5343 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5339.283 kb on - strand at 5339.517 kb on - strand at 5339.519 kb on - strand at 5339.568 kb on + strand at 5339.583 kb on - strand at 5339.613 kb on + strand at 5339.720 kb on + strand, within JDDGAC_27870 at 5339.783 kb on - strand, within JDDGAC_27870 at 5339.811 kb on - strand, within JDDGAC_27870 at 5340.166 kb on + strand at 5340.167 kb on - strand at 5340.168 kb on + strand at 5340.193 kb on - strand at 5340.226 kb on + strand at 5340.226 kb on + strand at 5340.227 kb on - strand at 5340.228 kb on + strand at 5340.228 kb on + strand at 5340.228 kb on + strand at 5340.229 kb on - strand at 5340.246 kb on + strand at 5340.246 kb on + strand at 5340.247 kb on - strand at 5340.247 kb on - strand at 5340.663 kb on + strand, within gpA1 at 5340.663 kb on + strand, within gpA1 at 5340.663 kb on + strand, within gpA1 at 5340.663 kb on + strand, within gpA1 at 5340.664 kb on - strand, within gpA1 at 5340.778 kb on + strand, within gpA1 at 5340.778 kb on + strand, within gpA1 at 5340.779 kb on - strand, within gpA1 at 5340.779 kb on - strand, within gpA1 at 5341.195 kb on + strand, within gpA1 at 5341.195 kb on + strand, within gpA1 at 5341.196 kb on - strand, within gpA1 at 5341.196 kb on - strand, within gpA1 at 5341.313 kb on + strand, within gpA1 at 5341.500 kb on + strand, within gpA1 at 5341.500 kb on + strand, within gpA1 at 5341.590 kb on + strand, within gpA1 at 5341.794 kb on + strand, within gpA1 at 5341.795 kb on - strand, within gpA1 at 5341.828 kb on + strand, within gpA1 at 5341.828 kb on + strand, within gpA1 at 5341.828 kb on + strand, within gpA1 at 5341.829 kb on - strand, within gpA1 at 5341.829 kb on - strand, within gpA1 at 5341.829 kb on - strand, within gpA1 at 5341.829 kb on - strand, within gpA1 at 5341.865 kb on - strand, within gpA1 at 5341.879 kb on + strand, within gpA1 at 5341.880 kb on - strand, within gpA1 at 5342.148 kb on + strand at 5342.148 kb on + strand at 5342.236 kb on + strand, within JDDGAC_27880 at 5342.398 kb on + strand at 5342.398 kb on + strand at 5342.503 kb on + strand at 5342.503 kb on + strand at 5342.542 kb on + strand, within JDDGAC_27885 at 5342.542 kb on + strand, within JDDGAC_27885 at 5342.542 kb on + strand, within JDDGAC_27885 at 5342.657 kb on - strand, within JDDGAC_27885 at 5342.768 kb on + strand, within JDDGAC_27885 at 5342.768 kb on + strand, within JDDGAC_27885
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 5,339,283 - +1.0 5,339,517 - +0.7 5,339,519 - -0.4 5,339,568 + -0.8 5,339,583 - +0.8 5,339,613 + -0.5 5,339,720 + JDDGAC_27870 0.28 +3.4 5,339,783 - JDDGAC_27870 0.42 +1.1 5,339,811 - JDDGAC_27870 0.47 +0.2 5,340,166 + -0.9 5,340,167 - +1.0 5,340,168 + -2.3 5,340,193 - +0.1 5,340,226 + +3.7 5,340,226 + -0.8 5,340,227 - -0.9 5,340,228 + -0.9 5,340,228 + +0.9 5,340,228 + -2.4 5,340,229 - +3.0 5,340,246 + -0.3 5,340,246 + -1.0 5,340,247 - -0.4 5,340,247 - -0.6 5,340,663 + gpA1 JDDGAC_27875 0.28 +0.5 5,340,663 + gpA1 JDDGAC_27875 0.28 -0.0 5,340,663 + gpA1 JDDGAC_27875 0.28 -1.8 5,340,663 + gpA1 JDDGAC_27875 0.28 -0.5 5,340,664 - gpA1 JDDGAC_27875 0.29 -0.3 5,340,778 + gpA1 JDDGAC_27875 0.34 -0.6 5,340,778 + gpA1 JDDGAC_27875 0.34 +3.4 5,340,779 - gpA1 JDDGAC_27875 0.34 -1.8 5,340,779 - gpA1 JDDGAC_27875 0.34 -1.0 5,341,195 + gpA1 JDDGAC_27875 0.54 -0.7 5,341,195 + gpA1 JDDGAC_27875 0.54 -0.7 5,341,196 - gpA1 JDDGAC_27875 0.54 -1.0 5,341,196 - gpA1 JDDGAC_27875 0.54 -0.6 5,341,313 + gpA1 JDDGAC_27875 0.59 +0.4 5,341,500 + gpA1 JDDGAC_27875 0.68 +0.6 5,341,500 + gpA1 JDDGAC_27875 0.68 +0.3 5,341,590 + gpA1 JDDGAC_27875 0.72 +0.2 5,341,794 + gpA1 JDDGAC_27875 0.82 -0.8 5,341,795 - gpA1 JDDGAC_27875 0.82 -0.9 5,341,828 + gpA1 JDDGAC_27875 0.83 -0.9 5,341,828 + gpA1 JDDGAC_27875 0.83 -1.1 5,341,828 + gpA1 JDDGAC_27875 0.83 +0.5 5,341,829 - gpA1 JDDGAC_27875 0.83 -0.9 5,341,829 - gpA1 JDDGAC_27875 0.83 +2.8 5,341,829 - gpA1 JDDGAC_27875 0.83 -0.7 5,341,829 - gpA1 JDDGAC_27875 0.83 -1.4 5,341,865 - gpA1 JDDGAC_27875 0.85 -0.3 5,341,879 + gpA1 JDDGAC_27875 0.86 -0.2 5,341,880 - gpA1 JDDGAC_27875 0.86 +0.5 5,342,148 + -1.0 5,342,148 + +1.0 5,342,236 + JDDGAC_27880 0.27 -0.9 5,342,398 + -0.4 5,342,398 + +1.8 5,342,503 + +0.0 5,342,503 + -1.0 5,342,542 + JDDGAC_27885 0.10 -1.0 5,342,542 + JDDGAC_27885 0.10 +1.1 5,342,542 + JDDGAC_27885 0.10 -0.5 5,342,657 - JDDGAC_27885 0.18 +1.0 5,342,768 + JDDGAC_27885 0.25 +0.3 5,342,768 + JDDGAC_27885 0.25 +0.1
Or see this region's nucleotide sequence