Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_26230 and insQ are separated by 95 nucleotides insQ and yfeD are separated by 39 nucleotides yfeD and yfeC are separated by 22 nucleotides yfeC and Ala_trna are separated by 220 nucleotides Ala_trna and Ala_trna are separated by 39 nucleotides
JDDGAC_26230: JDDGAC_26230 - IS66-like element ISEc8 family transposase, at 5,014,224 to 5,015,762
_26230
JDDGAC_26235: insQ - Putative RNA-guided DNA endonuclease InsQ, at 5,015,858 to 5,016,148
insQ
JDDGAC_26240: yfeD - Uncharacterized protein YfeD, at 5,016,188 to 5,016,559
yfeD
JDDGAC_26245: yfeC - Uncharacterized protein YfeC, at 5,016,582 to 5,016,941
yfeC
JDDGAC_26250: Ala_trna - tRNA-Ala(ggc), at 5,017,162 to 5,017,237
_trna
JDDGAC_26255: Ala_trna - tRNA-Ala(ggc), at 5,017,277 to 5,017,352
_trna
Position (kb) 5016
5017 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5015.791 kb on + strand at 5015.824 kb on - strand at 5015.876 kb on + strand at 5015.904 kb on + strand, within insQ at 5016.003 kb on + strand, within insQ at 5016.003 kb on + strand, within insQ at 5016.013 kb on + strand, within insQ at 5016.013 kb on + strand, within insQ at 5016.290 kb on + strand, within yfeD at 5016.291 kb on - strand, within yfeD at 5016.436 kb on + strand, within yfeD at 5016.570 kb on - strand at 5016.580 kb on + strand at 5016.584 kb on - strand at 5016.584 kb on - strand at 5016.613 kb on - strand at 5016.650 kb on + strand, within yfeC at 5016.650 kb on + strand, within yfeC at 5016.703 kb on - strand, within yfeC at 5016.703 kb on - strand, within yfeC at 5016.768 kb on - strand, within yfeC at 5016.774 kb on - strand, within yfeC at 5016.775 kb on + strand, within yfeC at 5016.873 kb on - strand, within yfeC at 5016.873 kb on - strand, within yfeC at 5016.873 kb on - strand, within yfeC at 5016.873 kb on - strand, within yfeC at 5016.875 kb on + strand, within yfeC at 5016.893 kb on - strand, within yfeC at 5016.958 kb on + strand at 5016.959 kb on - strand at 5016.959 kb on - strand at 5016.959 kb on - strand at 5016.972 kb on - strand at 5016.975 kb on - strand at 5016.984 kb on + strand at 5016.984 kb on + strand at 5016.985 kb on - strand at 5016.986 kb on + strand at 5016.987 kb on - strand at 5017.018 kb on + strand at 5017.018 kb on + strand at 5017.018 kb on + strand at 5017.019 kb on - strand at 5017.022 kb on + strand at 5017.022 kb on + strand at 5017.023 kb on - strand at 5017.023 kb on - strand at 5017.124 kb on + strand at 5017.124 kb on + strand at 5017.154 kb on + strand at 5017.167 kb on + strand at 5017.167 kb on + strand at 5017.169 kb on + strand at 5017.169 kb on + strand at 5017.169 kb on + strand at 5017.265 kb on + strand at 5017.342 kb on + strand, within Ala_trna at 5017.411 kb on + strand at 5017.412 kb on - strand at 5017.414 kb on + strand at 5017.422 kb on - strand at 5017.516 kb on + strand at 5017.555 kb on + strand at 5017.555 kb on + strand at 5017.556 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 5,015,791 + +0.2 5,015,824 - +0.1 5,015,876 + +0.5 5,015,904 + insQ JDDGAC_26235 0.16 +0.4 5,016,003 + insQ JDDGAC_26235 0.50 -1.9 5,016,003 + insQ JDDGAC_26235 0.50 +0.7 5,016,013 + insQ JDDGAC_26235 0.53 +3.8 5,016,013 + insQ JDDGAC_26235 0.53 +0.4 5,016,290 + yfeD JDDGAC_26240 0.27 -0.5 5,016,291 - yfeD JDDGAC_26240 0.28 -1.4 5,016,436 + yfeD JDDGAC_26240 0.67 -0.8 5,016,570 - -0.9 5,016,580 + -0.3 5,016,584 - -0.4 5,016,584 - -1.1 5,016,613 - -1.0 5,016,650 + yfeC JDDGAC_26245 0.19 +0.5 5,016,650 + yfeC JDDGAC_26245 0.19 -0.2 5,016,703 - yfeC JDDGAC_26245 0.34 +0.7 5,016,703 - yfeC JDDGAC_26245 0.34 +1.4 5,016,768 - yfeC JDDGAC_26245 0.52 -0.8 5,016,774 - yfeC JDDGAC_26245 0.53 -1.1 5,016,775 + yfeC JDDGAC_26245 0.54 +0.1 5,016,873 - yfeC JDDGAC_26245 0.81 -0.9 5,016,873 - yfeC JDDGAC_26245 0.81 -2.1 5,016,873 - yfeC JDDGAC_26245 0.81 -1.1 5,016,873 - yfeC JDDGAC_26245 0.81 +0.4 5,016,875 + yfeC JDDGAC_26245 0.81 -1.1 5,016,893 - yfeC JDDGAC_26245 0.86 -0.5 5,016,958 + -0.6 5,016,959 - +0.4 5,016,959 - -0.5 5,016,959 - +0.2 5,016,972 - -0.9 5,016,975 - +1.2 5,016,984 + +0.7 5,016,984 + -0.4 5,016,985 - -0.9 5,016,986 + -1.5 5,016,987 - +2.2 5,017,018 + -1.8 5,017,018 + +0.9 5,017,018 + +1.1 5,017,019 - +0.4 5,017,022 + +0.4 5,017,022 + -0.3 5,017,023 - -1.5 5,017,023 - +0.4 5,017,124 + +0.9 5,017,124 + -1.9 5,017,154 + +1.7 5,017,167 + -0.2 5,017,167 + -0.8 5,017,169 + +2.0 5,017,169 + -0.4 5,017,169 + -1.2 5,017,265 + -0.1 5,017,342 + Ala_trna JDDGAC_26255 0.86 +0.1 5,017,411 + +0.8 5,017,412 - -2.6 5,017,414 + -0.9 5,017,422 - +0.1 5,017,516 + -0.3 5,017,555 + -0.5 5,017,555 + +1.0 5,017,556 - -0.3
Or see this region's nucleotide sequence