Strain Fitness in Escherichia coli ECRC98 around JDDGAC_24450

Experiment: Bas69

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas69
4,684,233	+	emrA	JDDGAC_24445	0.30	+0.3
4,684,299	+	emrA	JDDGAC_24445	0.36	+0.4
4,684,299	+	emrA	JDDGAC_24445	0.36	-0.2
4,684,300	-	emrA	JDDGAC_24445	0.36	-0.5
4,684,379	+	emrA	JDDGAC_24445	0.43	+1.2
4,684,402	-	emrA	JDDGAC_24445	0.45	+1.7
4,684,435	+	emrA	JDDGAC_24445	0.47	+1.5
4,684,435	+	emrA	JDDGAC_24445	0.47	+0.9
4,684,435	+	emrA	JDDGAC_24445	0.47	-0.7
4,684,511	+	emrA	JDDGAC_24445	0.54	-0.0
4,684,511	+	emrA	JDDGAC_24445	0.54	+0.1
4,684,511	+	emrA	JDDGAC_24445	0.54	+0.1
4,684,512	-	emrA	JDDGAC_24445	0.54	+0.3
4,684,512	-	emrA	JDDGAC_24445	0.54	-0.5
4,684,625	+	emrA	JDDGAC_24445	0.64	+0.7
4,684,693	-	emrA	JDDGAC_24445	0.69	-0.7
4,684,861	-	emrA	JDDGAC_24445	0.84	+0.9
4,684,861	-	emrA	JDDGAC_24445	0.84	-1.2
4,684,886	+	emrA	JDDGAC_24445	0.86	+1.2
4,684,886	+	emrA	JDDGAC_24445	0.86	-0.3
4,684,886	+	emrA	JDDGAC_24445	0.86	-0.8
4,684,886	+	emrA	JDDGAC_24445	0.86	-0.1
4,684,887	-	emrA	JDDGAC_24445	0.86	+0.1
4,684,932	-	emrA	JDDGAC_24445	0.90	-0.6
4,684,932	-	emrA	JDDGAC_24445	0.90	+0.7
4,684,953	+				-0.8
4,684,957	+				-1.3
4,684,958	-				+1.8
4,684,960	-				+1.0
4,684,993	-				-0.7
4,684,993	-				+0.2
4,685,053	-				-0.8
4,685,073	+				-1.6
4,685,150	-				-1.4
4,685,440	-	emrR	JDDGAC_24450	0.49	-0.3
4,685,605	-	emrR	JDDGAC_24450	0.80	-0.5
4,685,605	-	emrR	JDDGAC_24450	0.80	-1.4
4,685,765	+				+0.1
4,685,801	+				-0.8
4,685,803	+				+0.5
4,685,803	+				-1.3
4,685,804	-				-1.5
4,685,804	-				-0.5
4,685,804	-				-2.1
4,685,805	+				-1.6
4,685,835	-	ygaH	JDDGAC_24455	0.10	+1.7
4,685,848	-	ygaH	JDDGAC_24455	0.14	+0.1
4,685,848	-	ygaH	JDDGAC_24455	0.14	+1.6
4,685,865	+	ygaH	JDDGAC_24455	0.19	+0.7
4,685,866	-	ygaH	JDDGAC_24455	0.20	-0.4
4,685,866	-	ygaH	JDDGAC_24455	0.20	+3.6
4,685,883	-	ygaH	JDDGAC_24455	0.25	-1.2
4,686,086	+	ygaH	JDDGAC_24455	0.85	+2.2
4,686,129	-				+0.2
4,686,129	-				-1.0
4,686,221	+	ygaZ	JDDGAC_24460	0.13	+0.5
4,686,222	-	ygaZ	JDDGAC_24460	0.13	+3.2
4,686,333	-	ygaZ	JDDGAC_24460	0.28	-0.7
4,686,392	+	ygaZ	JDDGAC_24460	0.36	-0.7
4,686,404	+	ygaZ	JDDGAC_24460	0.38	+1.1
4,686,466	+	ygaZ	JDDGAC_24460	0.46	+0.9
4,686,560	-	ygaZ	JDDGAC_24460	0.59	-0.5
4,686,560	-	ygaZ	JDDGAC_24460	0.59	+1.7
4,686,586	-	ygaZ	JDDGAC_24460	0.62	-0.1
4,686,640	+	ygaZ	JDDGAC_24460	0.70	-0.0
4,686,641	-	ygaZ	JDDGAC_24460	0.70	+0.5
4,686,641	-	ygaZ	JDDGAC_24460	0.70	+0.6
4,686,691	-	ygaZ	JDDGAC_24460	0.77	-0.5