Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_08740 and JDDGAC_08750 are separated by 573 nucleotides JDDGAC_08750 and JDDGAC_08755 overlap by 4 nucleotides JDDGAC_08755 and JDDGAC_08760 are separated by 93 nucleotides
JDDGAC_08740: JDDGAC_08740 - hypothetical protein, at 1,527,836 to 1,528,021
_08740
JDDGAC_08750: JDDGAC_08750 - cell division inhibition protein DicB, at 1,528,595 to 1,528,783
_08750
JDDGAC_08755: JDDGAC_08755 - DUF1482 domain-containing protein, at 1,528,780 to 1,528,971
_08755
JDDGAC_08760: JDDGAC_08760 - exonuclease, at 1,529,065 to 1,531,536
_08760
Position (kb)
1528
1529 Strain fitness (log2 ratio)
-2
-1
0
1 at 1527.796 kb on + strand at 1527.830 kb on - strand at 1527.863 kb on - strand, within JDDGAC_08740 at 1528.132 kb on + strand at 1528.132 kb on + strand at 1528.612 kb on + strand at 1528.613 kb on - strand at 1528.672 kb on + strand, within JDDGAC_08750 at 1528.725 kb on + strand, within JDDGAC_08750 at 1528.725 kb on + strand, within JDDGAC_08750 at 1528.775 kb on - strand at 1528.814 kb on - strand, within JDDGAC_08755 at 1528.814 kb on - strand, within JDDGAC_08755 at 1528.853 kb on + strand, within JDDGAC_08755 at 1528.853 kb on + strand, within JDDGAC_08755 at 1528.854 kb on - strand, within JDDGAC_08755 at 1528.942 kb on - strand, within JDDGAC_08755 at 1528.945 kb on - strand, within JDDGAC_08755
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 1,527,796 + -1.8 1,527,830 - -2.1 1,527,863 - JDDGAC_08740 0.15 -0.4 1,528,132 + +0.5 1,528,132 + -0.9 1,528,612 + +0.4 1,528,613 - -1.7 1,528,672 + JDDGAC_08750 0.41 -1.7 1,528,725 + JDDGAC_08750 0.69 +0.8 1,528,725 + JDDGAC_08750 0.69 -0.3 1,528,775 - +0.4 1,528,814 - JDDGAC_08755 0.18 -0.2 1,528,814 - JDDGAC_08755 0.18 -0.6 1,528,853 + JDDGAC_08755 0.38 -0.3 1,528,853 + JDDGAC_08755 0.38 -1.1 1,528,854 - JDDGAC_08755 0.39 -0.5 1,528,942 - JDDGAC_08755 0.84 -0.7 1,528,945 - JDDGAC_08755 0.86 -1.1
Or see this region's nucleotide sequence