Strain Fitness in Escherichia coli ECRC98 around JDDGAC_08755

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_08740 and JDDGAC_08750 are separated by 573 nucleotidesJDDGAC_08750 and JDDGAC_08755 overlap by 4 nucleotidesJDDGAC_08755 and JDDGAC_08760 are separated by 93 nucleotides JDDGAC_08740: JDDGAC_08740 - hypothetical protein, at 1,527,836 to 1,528,021 _08740 JDDGAC_08750: JDDGAC_08750 - cell division inhibition protein DicB, at 1,528,595 to 1,528,783 _08750 JDDGAC_08755: JDDGAC_08755 - DUF1482 domain-containing protein, at 1,528,780 to 1,528,971 _08755 JDDGAC_08760: JDDGAC_08760 - exonuclease, at 1,529,065 to 1,531,536 _08760 Position (kb) 1528 1529Strain fitness (log2 ratio) -2 -1 0 1at 1527.796 kb on + strandat 1527.830 kb on - strandat 1527.863 kb on - strand, within JDDGAC_08740at 1528.132 kb on + strandat 1528.132 kb on + strandat 1528.612 kb on + strandat 1528.613 kb on - strandat 1528.672 kb on + strand, within JDDGAC_08750at 1528.725 kb on + strand, within JDDGAC_08750at 1528.725 kb on + strand, within JDDGAC_08750at 1528.775 kb on - strandat 1528.814 kb on - strand, within JDDGAC_08755at 1528.814 kb on - strand, within JDDGAC_08755at 1528.853 kb on + strand, within JDDGAC_08755at 1528.853 kb on + strand, within JDDGAC_08755at 1528.854 kb on - strand, within JDDGAC_08755at 1528.942 kb on - strand, within JDDGAC_08755at 1528.945 kb on - strand, within JDDGAC_08755

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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1,527,796 + -1.8
1,527,830 - -2.1
1,527,863 - JDDGAC_08740 0.15 -0.4
1,528,132 + +0.5
1,528,132 + -0.9
1,528,612 + +0.4
1,528,613 - -1.7
1,528,672 + JDDGAC_08750 0.41 -1.7
1,528,725 + JDDGAC_08750 0.69 +0.8
1,528,725 + JDDGAC_08750 0.69 -0.3
1,528,775 - +0.4
1,528,814 - JDDGAC_08755 0.18 -0.2
1,528,814 - JDDGAC_08755 0.18 -0.6
1,528,853 + JDDGAC_08755 0.38 -0.3
1,528,853 + JDDGAC_08755 0.38 -1.1
1,528,854 - JDDGAC_08755 0.39 -0.5
1,528,942 - JDDGAC_08755 0.84 -0.7
1,528,945 - JDDGAC_08755 0.86 -1.1

Or see this region's nucleotide sequence