Strain Fitness in Escherichia coli ECRC98 around JDDGAC_08560

Experiment: Bas69

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntJDDGAC_08545 and tnpB are separated by 49 nucleotidestnpB and tnpB overlap by 4 nucleotidestnpB and nu1 are separated by 75 nucleotidesnu1 and JDDGAC_08565 are separated by 750 nucleotides JDDGAC_08545: JDDGAC_08545 - IS66-like element ISEc8 family transposase, at 1,504,116 to 1,505,654 _08545 JDDGAC_08550: tnpB - IS66 family insertion sequence element accessory protein TnpB, at 1,505,704 to 1,506,051 tnpB JDDGAC_08555: tnpB - IS66 family insertion sequence element accessory protein TnpB, at 1,506,048 to 1,506,428 tnpB JDDGAC_08560: nu1 - Prophage Qin DNA packaging protein NU1-like protein, at 1,506,504 to 1,506,779 nu1 JDDGAC_08565: JDDGAC_08565 - holin, at 1,507,530 to 1,507,736 _08565 Position (kb) 1506 1507Strain fitness (log2 ratio) -2 -1 0 1 2at 1506.512 kb on + strandat 1506.512 kb on + strandat 1506.534 kb on - strand, within nu1at 1506.623 kb on + strand, within nu1at 1506.637 kb on + strand, within nu1at 1506.643 kb on - strand, within nu1at 1506.643 kb on - strand, within nu1at 1506.748 kb on - strand, within nu1at 1507.070 kb on + strandat 1507.079 kb on - strandat 1507.397 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
remove
1,506,512 + -1.2
1,506,512 + +0.0
1,506,534 - nu1 JDDGAC_08560 0.11 -0.2
1,506,623 + nu1 JDDGAC_08560 0.43 -2.2
1,506,637 + nu1 JDDGAC_08560 0.48 -1.8
1,506,643 - nu1 JDDGAC_08560 0.50 -0.9
1,506,643 - nu1 JDDGAC_08560 0.50 +1.2
1,506,748 - nu1 JDDGAC_08560 0.88 -1.1
1,507,070 + +1.7
1,507,079 - +1.2
1,507,397 - +2.1

Or see this region's nucleotide sequence