Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_08545 and tnpB are separated by 49 nucleotides tnpB and tnpB overlap by 4 nucleotides tnpB and nu1 are separated by 75 nucleotides nu1 and JDDGAC_08565 are separated by 750 nucleotides
JDDGAC_08545: JDDGAC_08545 - IS66-like element ISEc8 family transposase, at 1,504,116 to 1,505,654
_08545
JDDGAC_08550: tnpB - IS66 family insertion sequence element accessory protein TnpB, at 1,505,704 to 1,506,051
tnpB
JDDGAC_08555: tnpB - IS66 family insertion sequence element accessory protein TnpB, at 1,506,048 to 1,506,428
tnpB
JDDGAC_08560: nu1 - Prophage Qin DNA packaging protein NU1-like protein, at 1,506,504 to 1,506,779
nu1
JDDGAC_08565: JDDGAC_08565 - holin, at 1,507,530 to 1,507,736
_08565
Position (kb)
1506
1507 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1506.512 kb on + strand at 1506.512 kb on + strand at 1506.534 kb on - strand, within nu1 at 1506.623 kb on + strand, within nu1 at 1506.637 kb on + strand, within nu1 at 1506.643 kb on - strand, within nu1 at 1506.643 kb on - strand, within nu1 at 1506.748 kb on - strand, within nu1 at 1507.070 kb on + strand at 1507.079 kb on - strand at 1507.397 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 1,506,512 + -1.2 1,506,512 + +0.0 1,506,534 - nu1 JDDGAC_08560 0.11 -0.2 1,506,623 + nu1 JDDGAC_08560 0.43 -2.2 1,506,637 + nu1 JDDGAC_08560 0.48 -1.8 1,506,643 - nu1 JDDGAC_08560 0.50 -0.9 1,506,643 - nu1 JDDGAC_08560 0.50 +1.2 1,506,748 - nu1 JDDGAC_08560 0.88 -1.1 1,507,070 + +1.7 1,507,079 - +1.2 1,507,397 - +2.1
Or see this region's nucleotide sequence