Strain Fitness in Escherichia coli ECRC98 around JDDGAC_07045

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_07035 and JDDGAC_07040 are separated by 33 nucleotidesJDDGAC_07040 and eCs1768 are separated by 31 nucleotideseCs1768 and JDDGAC_07050 are separated by 68 nucleotidesJDDGAC_07050 and ydaS overlap by 17 nucleotidesydaS and JDDGAC_07060 are separated by 124 nucleotides JDDGAC_07035: JDDGAC_07035 - DUF1627 domain-containing protein, at 1,216,608 to 1,217,324 _07035 JDDGAC_07040: JDDGAC_07040 - replication protein, at 1,217,358 to 1,217,780 _07040 JDDGAC_07045: eCs1768 - phage replisome organizer, at 1,217,812 to 1,218,849 eCs1768 JDDGAC_07050: JDDGAC_07050 - Rha family transcriptional regulator, at 1,218,918 to 1,219,343 _07050 JDDGAC_07055: ydaS - transcriptional regulator, at 1,219,327 to 1,219,650 ydaS JDDGAC_07060: JDDGAC_07060 - Prophage repressor RacR, at 1,219,775 to 1,220,251 _07060 Position (kb) 1217 1218 1219Strain fitness (log2 ratio) -2 -1 0 1at 1216.971 kb on - strand, within JDDGAC_07035at 1217.389 kb on + strandat 1217.469 kb on - strand, within JDDGAC_07040at 1218.186 kb on + strand, within eCs1768at 1218.355 kb on - strand, within eCs1768at 1219.216 kb on + strand, within JDDGAC_07050at 1219.435 kb on + strand, within ydaSat 1219.435 kb on + strand, within ydaSat 1219.439 kb on + strand, within ydaSat 1219.534 kb on + strand, within ydaSat 1219.570 kb on + strand, within ydaSat 1219.634 kb on + strandat 1219.635 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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1,216,971 - JDDGAC_07035 0.51 -1.0
1,217,389 + +0.8
1,217,469 - JDDGAC_07040 0.26 -0.1
1,218,186 + eCs1768 JDDGAC_07045 0.36 -1.5
1,218,355 - eCs1768 JDDGAC_07045 0.52 -2.3
1,219,216 + JDDGAC_07050 0.70 +0.4
1,219,435 + ydaS JDDGAC_07055 0.33 +1.2
1,219,435 + ydaS JDDGAC_07055 0.33 -0.3
1,219,439 + ydaS JDDGAC_07055 0.35 -0.5
1,219,534 + ydaS JDDGAC_07055 0.64 -0.2
1,219,570 + ydaS JDDGAC_07055 0.75 +0.7
1,219,634 + +0.4
1,219,635 - +0.9

Or see this region's nucleotide sequence