Strain Fitness in Escherichia coli ECRC98 around JDDGAC_05695

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgpL and JDDGAC_05690 are separated by 8 nucleotidesJDDGAC_05690 and gp41 are separated by 14 nucleotidesgp41 and hI1514 are separated by 126 nucleotides JDDGAC_05685: gpL - phage tail protein, at 989,733 to 991,235 gpL JDDGAC_05690: JDDGAC_05690 - phage tail protein, at 991,244 to 991,609 _05690 JDDGAC_05695: gp41 - Phage tail assembly chaperone proteins, E, or 41 or 14, at 991,624 to 992,100 gp41 JDDGAC_05700: hI1514 - tail tape measure protein, at 992,227 to 994,302 hI1514 Position (kb) 991 992 993Strain fitness (log2 ratio) -2 -1 0 1 2 3at 990.649 kb on - strand, within gpLat 990.782 kb on + strand, within gpLat 990.782 kb on + strand, within gpLat 990.865 kb on - strand, within gpLat 990.865 kb on - strand, within gpLat 990.865 kb on - strand, within gpLat 991.171 kb on + strandat 991.239 kb on - strandat 991.319 kb on - strand, within JDDGAC_05690at 991.319 kb on - strand, within JDDGAC_05690at 991.370 kb on + strand, within JDDGAC_05690at 991.371 kb on - strand, within JDDGAC_05690at 991.745 kb on - strand, within gp41at 991.827 kb on + strand, within gp41at 991.985 kb on + strand, within gp41at 991.986 kb on - strand, within gp41at 991.986 kb on - strand, within gp41at 992.222 kb on + strandat 992.222 kb on + strandat 992.255 kb on + strandat 992.390 kb on + strandat 992.390 kb on + strandat 992.540 kb on + strand, within hI1514at 992.540 kb on + strand, within hI1514at 992.540 kb on + strand, within hI1514at 992.540 kb on + strand, within hI1514at 992.541 kb on - strand, within hI1514at 992.541 kb on - strand, within hI1514at 992.542 kb on + strand, within hI1514at 992.542 kb on + strand, within hI1514at 992.563 kb on - strand, within hI1514at 992.590 kb on + strand, within hI1514at 992.590 kb on + strand, within hI1514at 992.614 kb on + strand, within hI1514at 992.710 kb on + strand, within hI1514at 992.711 kb on - strand, within hI1514at 992.712 kb on + strand, within hI1514at 992.712 kb on + strand, within hI1514at 992.713 kb on - strand, within hI1514at 992.713 kb on - strand, within hI1514at 992.845 kb on + strand, within hI1514at 992.845 kb on + strand, within hI1514at 992.845 kb on + strand, within hI1514at 992.845 kb on + strand, within hI1514at 992.845 kb on + strand, within hI1514at 992.846 kb on - strand, within hI1514at 992.846 kb on - strand, within hI1514at 992.846 kb on - strand, within hI1514at 992.846 kb on - strand, within hI1514at 992.902 kb on - strand, within hI1514

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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990,649 - gpL JDDGAC_05685 0.61 -0.1
990,782 + gpL JDDGAC_05685 0.70 -0.4
990,782 + gpL JDDGAC_05685 0.70 +0.9
990,865 - gpL JDDGAC_05685 0.75 +0.0
990,865 - gpL JDDGAC_05685 0.75 +2.1
990,865 - gpL JDDGAC_05685 0.75 -0.9
991,171 + -0.0
991,239 - -0.7
991,319 - JDDGAC_05690 0.20 +0.2
991,319 - JDDGAC_05690 0.20 -2.1
991,370 + JDDGAC_05690 0.34 +1.2
991,371 - JDDGAC_05690 0.35 +0.5
991,745 - gp41 JDDGAC_05695 0.25 -0.7
991,827 + gp41 JDDGAC_05695 0.43 -1.0
991,985 + gp41 JDDGAC_05695 0.76 +1.5
991,986 - gp41 JDDGAC_05695 0.76 -0.2
991,986 - gp41 JDDGAC_05695 0.76 -1.4
992,222 + +1.5
992,222 + +0.4
992,255 + +0.2
992,390 + -0.1
992,390 + +0.3
992,540 + hI1514 JDDGAC_05700 0.15 -0.9
992,540 + hI1514 JDDGAC_05700 0.15 -1.7
992,540 + hI1514 JDDGAC_05700 0.15 +3.1
992,540 + hI1514 JDDGAC_05700 0.15 -1.4
992,541 - hI1514 JDDGAC_05700 0.15 +0.3
992,541 - hI1514 JDDGAC_05700 0.15 -0.7
992,542 + hI1514 JDDGAC_05700 0.15 -0.0
992,542 + hI1514 JDDGAC_05700 0.15 +0.7
992,563 - hI1514 JDDGAC_05700 0.16 +0.8
992,590 + hI1514 JDDGAC_05700 0.17 +0.2
992,590 + hI1514 JDDGAC_05700 0.17 -1.2
992,614 + hI1514 JDDGAC_05700 0.19 -0.1
992,710 + hI1514 JDDGAC_05700 0.23 -0.6
992,711 - hI1514 JDDGAC_05700 0.23 -1.5
992,712 + hI1514 JDDGAC_05700 0.23 -0.8
992,712 + hI1514 JDDGAC_05700 0.23 -0.1
992,713 - hI1514 JDDGAC_05700 0.23 +1.8
992,713 - hI1514 JDDGAC_05700 0.23 +3.5
992,845 + hI1514 JDDGAC_05700 0.30 -0.2
992,845 + hI1514 JDDGAC_05700 0.30 +1.0
992,845 + hI1514 JDDGAC_05700 0.30 -0.7
992,845 + hI1514 JDDGAC_05700 0.30 +0.1
992,845 + hI1514 JDDGAC_05700 0.30 -0.4
992,846 - hI1514 JDDGAC_05700 0.30 +0.3
992,846 - hI1514 JDDGAC_05700 0.30 +0.9
992,846 - hI1514 JDDGAC_05700 0.30 -2.3
992,846 - hI1514 JDDGAC_05700 0.30 -0.2
992,902 - hI1514 JDDGAC_05700 0.33 +1.9

Or see this region's nucleotide sequence