Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gam and JDDGAC_05545 are separated by 97 nucleotides JDDGAC_05545 and JDDGAC_05550 are separated by 3 nucleotides JDDGAC_05550 and JDDGAC_05555 overlap by 1 nucleotides JDDGAC_05555 and JDDGAC_05560 are separated by 6 nucleotides
JDDGAC_05540: gam - host-nuclease inhibitor protein Gam, at 972,736 to 973,266
gam
JDDGAC_05545: JDDGAC_05545 - hypothetical protein, at 973,364 to 973,906
_05545
JDDGAC_05550: JDDGAC_05550 - Uncharacterized protein gp11, at 973,910 to 974,443
_05550
JDDGAC_05555: JDDGAC_05555 - Mu prophage protein, at 974,443 to 974,958
_05555
JDDGAC_05560: JDDGAC_05560 - AsnC family protein, at 974,965 to 975,513
_05560
Position (kb) 973
974
975 Strain fitness (log2 ratio) -1
0
1 at 973.206 kb on + strand, within gam at 973.305 kb on - strand at 973.349 kb on + strand at 973.753 kb on + strand, within JDDGAC_05545 at 973.815 kb on + strand, within JDDGAC_05545 at 973.836 kb on + strand, within JDDGAC_05545 at 973.836 kb on + strand, within JDDGAC_05545 at 973.837 kb on - strand, within JDDGAC_05545 at 974.075 kb on + strand, within JDDGAC_05550 at 974.252 kb on + strand, within JDDGAC_05550 at 974.316 kb on - strand, within JDDGAC_05550 at 974.316 kb on - strand, within JDDGAC_05550 at 974.341 kb on + strand, within JDDGAC_05550 at 974.441 kb on + strand at 974.452 kb on - strand at 974.515 kb on - strand, within JDDGAC_05555 at 974.574 kb on - strand, within JDDGAC_05555 at 974.645 kb on + strand, within JDDGAC_05555 at 974.929 kb on + strand at 974.962 kb on - strand at 974.972 kb on + strand at 975.078 kb on + strand, within JDDGAC_05560 at 975.113 kb on + strand, within JDDGAC_05560 at 975.114 kb on - strand, within JDDGAC_05560 at 975.114 kb on - strand, within JDDGAC_05560 at 975.248 kb on - strand, within JDDGAC_05560 at 975.402 kb on + strand, within JDDGAC_05560
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 973,206 + gam JDDGAC_05540 0.89 -0.2 973,305 - -0.8 973,349 + -0.4 973,753 + JDDGAC_05545 0.72 +0.3 973,815 + JDDGAC_05545 0.83 +1.2 973,836 + JDDGAC_05545 0.87 +0.6 973,836 + JDDGAC_05545 0.87 +0.0 973,837 - JDDGAC_05545 0.87 -0.3 974,075 + JDDGAC_05550 0.31 +1.2 974,252 + JDDGAC_05550 0.64 -0.3 974,316 - JDDGAC_05550 0.76 +1.0 974,316 - JDDGAC_05550 0.76 -0.8 974,341 + JDDGAC_05550 0.81 -0.6 974,441 + +0.5 974,452 - +1.1 974,515 - JDDGAC_05555 0.14 +1.3 974,574 - JDDGAC_05555 0.25 -1.5 974,645 + JDDGAC_05555 0.39 -0.8 974,929 + -0.6 974,962 - +0.8 974,972 + +0.2 975,078 + JDDGAC_05560 0.21 -0.8 975,113 + JDDGAC_05560 0.27 +0.0 975,114 - JDDGAC_05560 0.27 -1.0 975,114 - JDDGAC_05560 0.27 -0.4 975,248 - JDDGAC_05560 0.52 +0.2 975,402 + JDDGAC_05560 0.80 -1.3
Or see this region's nucleotide sequence