Strain Fitness in Escherichia coli ECRC98 around JDDGAC_05135

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntacnA and ymiC are separated by 163 nucleotidesymiC and JDDGAC_05135 are separated by 128 nucleotidesJDDGAC_05135 and ymiA are separated by 2 nucleotidesymiA and cysB are separated by 330 nucleotides JDDGAC_05120: acnA - aconitate hydratase AcnA, at 898,696 to 901,371 acnA JDDGAC_05130: ymiC - Protein YmiC, at 901,535 to 901,615 ymiC JDDGAC_05135: JDDGAC_05135 - Protein, C-ter, truncated protein, at 901,744 to 901,911 _05135 JDDGAC_05140: ymiA - YmiA family putative membrane protein, at 901,914 to 902,042 ymiA JDDGAC_05145: cysB - HTH-type transcriptional regulator CysB, at 902,373 to 903,347 cysB Position (kb) 901 902Strain fitness (log2 ratio) -2 -1 0 1 2at 900.902 kb on + strand, within acnAat 900.903 kb on - strand, within acnAat 900.903 kb on - strand, within acnAat 900.935 kb on - strand, within acnAat 901.206 kb on + strandat 901.304 kb on + strandat 901.304 kb on + strandat 901.305 kb on - strandat 901.344 kb on + strandat 901.631 kb on - strandat 901.631 kb on - strandat 901.636 kb on - strandat 901.654 kb on - strandat 901.654 kb on - strandat 901.681 kb on + strandat 901.746 kb on - strandat 901.746 kb on - strandat 901.805 kb on - strand, within JDDGAC_05135at 901.805 kb on - strand, within JDDGAC_05135at 901.867 kb on - strand, within JDDGAC_05135at 901.912 kb on - strandat 901.912 kb on - strandat 901.912 kb on - strandat 901.912 kb on - strandat 901.912 kb on - strandat 901.912 kb on - strandat 901.916 kb on - strandat 902.057 kb on - strandat 902.237 kb on - strandat 902.248 kb on + strandat 902.267 kb on - strandat 902.324 kb on + strandat 902.391 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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900,902 + acnA JDDGAC_05120 0.82 -0.1
900,903 - acnA JDDGAC_05120 0.82 +0.2
900,903 - acnA JDDGAC_05120 0.82 +1.8
900,935 - acnA JDDGAC_05120 0.84 +0.5
901,206 + +0.6
901,304 + +0.3
901,304 + +1.3
901,305 - -0.8
901,344 + -0.3
901,631 - +1.9
901,631 - +0.6
901,636 - -1.2
901,654 - +1.0
901,654 - +1.3
901,681 + +1.5
901,746 - +0.8
901,746 - +0.1
901,805 - JDDGAC_05135 0.36 -1.7
901,805 - JDDGAC_05135 0.36 +0.1
901,867 - JDDGAC_05135 0.73 -1.8
901,912 - +0.1
901,912 - -0.9
901,912 - -1.5
901,912 - +1.4
901,912 - -0.1
901,912 - -0.7
901,916 - +0.9
902,057 - -0.6
902,237 - +1.6
902,248 + -0.5
902,267 - -0.1
902,324 + +0.5
902,391 + -0.2

Or see this region's nucleotide sequence