Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hicB and hicA are separated by 24 nucleotides hicA and yncJ are separated by 281 nucleotides yncJ and rlhA are separated by 91 nucleotides rlhA and sutR are separated by 30 nucleotides sutR and ydcO are separated by 91 nucleotides
JDDGAC_04075: hicB - type II toxin-antitoxin system antitoxin HicB, at 713,543 to 713,980
hicB
JDDGAC_04080: hicA - type II toxin-antitoxin system mRNA interferase toxin HicA, at 714,005 to 714,181
hicA
JDDGAC_04085: yncJ - Uncharacterized protein YncJ, at 714,463 to 714,633
yncJ
JDDGAC_04090: rlhA - 23S rRNA 5-hydroxycytidine C2501 synthase, at 714,725 to 716,728
rlhA
JDDGAC_04095: sutR - DNA-binding transcriptional regulator SutR, at 716,759 to 717,295
sutR
JDDGAC_04100: ydcO - BenE family transporter YdcO, at 717,387 to 718,559
ydcO
Position (kb) 714
715
716
717 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 713.915 kb on - strand, within hicB at 714.037 kb on + strand, within hicA at 714.202 kb on + strand at 714.203 kb on - strand at 714.203 kb on - strand at 714.203 kb on - strand at 714.205 kb on - strand at 714.241 kb on + strand at 714.257 kb on - strand at 714.347 kb on + strand at 714.809 kb on + strand at 714.810 kb on - strand at 714.955 kb on + strand, within rlhA at 715.221 kb on - strand, within rlhA at 715.449 kb on - strand, within rlhA at 715.449 kb on - strand, within rlhA at 715.511 kb on - strand, within rlhA at 716.173 kb on - strand, within rlhA at 716.422 kb on - strand, within rlhA at 716.593 kb on - strand at 716.618 kb on - strand at 716.655 kb on - strand at 716.699 kb on + strand at 716.700 kb on - strand at 716.747 kb on + strand at 716.821 kb on - strand, within sutR at 716.821 kb on - strand, within sutR at 716.821 kb on - strand, within sutR at 716.821 kb on - strand, within sutR at 716.824 kb on + strand, within sutR at 717.252 kb on - strand at 717.252 kb on - strand at 717.252 kb on - strand at 717.260 kb on - strand at 717.368 kb on + strand at 717.442 kb on + strand at 717.574 kb on + strand, within ydcO at 717.574 kb on + strand, within ydcO at 717.650 kb on - strand, within ydcO at 717.677 kb on + strand, within ydcO at 717.698 kb on - strand, within ydcO
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 713,915 - hicB JDDGAC_04075 0.85 +0.2 714,037 + hicA JDDGAC_04080 0.18 +0.1 714,202 + +0.3 714,203 - +1.7 714,203 - +0.2 714,203 - +0.5 714,205 - +2.5 714,241 + -0.9 714,257 - +1.2 714,347 + +2.5 714,809 + +0.5 714,810 - +0.1 714,955 + rlhA JDDGAC_04090 0.11 -1.9 715,221 - rlhA JDDGAC_04090 0.25 +0.3 715,449 - rlhA JDDGAC_04090 0.36 -1.0 715,449 - rlhA JDDGAC_04090 0.36 -0.3 715,511 - rlhA JDDGAC_04090 0.39 -1.3 716,173 - rlhA JDDGAC_04090 0.72 +0.1 716,422 - rlhA JDDGAC_04090 0.85 +0.1 716,593 - +1.7 716,618 - -0.3 716,655 - -1.4 716,699 + +0.5 716,700 - -0.6 716,747 + +1.0 716,821 - sutR JDDGAC_04095 0.12 -0.0 716,821 - sutR JDDGAC_04095 0.12 -0.5 716,821 - sutR JDDGAC_04095 0.12 -0.7 716,821 - sutR JDDGAC_04095 0.12 -0.2 716,824 + sutR JDDGAC_04095 0.12 +0.3 717,252 - -0.4 717,252 - +2.9 717,252 - +0.3 717,260 - -1.4 717,368 + -1.9 717,442 + -0.9 717,574 + ydcO JDDGAC_04100 0.16 -0.3 717,574 + ydcO JDDGAC_04100 0.16 +0.7 717,650 - ydcO JDDGAC_04100 0.22 -1.1 717,677 + ydcO JDDGAC_04100 0.25 -0.4 717,698 - ydcO JDDGAC_04100 0.27 +2.3
Or see this region's nucleotide sequence