Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tcyP and ybcI are separated by 132 nucleotides ybcI and hxpB are separated by 162 nucleotides hxpB and yniB are separated by 146 nucleotides
JDDGAC_01580: tcyP - cystine/sulfocysteine:cation symporter, at 277,201 to 278,592
tcyP
JDDGAC_01585: ybcI - metal-dependent hydrolase, at 278,725 to 279,315
ybcI
JDDGAC_01590: hxpB - hexitol phosphatase HxpB, at 279,478 to 280,146
hxpB
JDDGAC_01595: yniB - Uncharacterized protein YniB, at 280,293 to 280,829
yniB
Position (kb) 278
279
280 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 277.774 kb on - strand, within tcyP at 277.907 kb on - strand, within tcyP at 278.032 kb on - strand, within tcyP at 278.133 kb on - strand, within tcyP at 278.133 kb on - strand, within tcyP at 278.133 kb on - strand, within tcyP at 278.133 kb on - strand, within tcyP at 278.133 kb on - strand, within tcyP at 278.133 kb on - strand, within tcyP at 278.137 kb on - strand, within tcyP at 278.137 kb on - strand, within tcyP at 278.262 kb on + strand, within tcyP at 278.263 kb on - strand, within tcyP at 278.398 kb on - strand, within tcyP at 278.419 kb on - strand, within tcyP at 278.521 kb on - strand at 278.614 kb on - strand at 278.614 kb on - strand at 278.638 kb on + strand at 278.745 kb on + strand at 278.745 kb on + strand at 278.748 kb on + strand at 278.749 kb on - strand at 278.776 kb on - strand at 278.974 kb on + strand, within ybcI at 278.975 kb on - strand, within ybcI at 279.216 kb on + strand, within ybcI at 279.217 kb on - strand, within ybcI at 279.285 kb on + strand at 279.318 kb on + strand at 279.535 kb on + strand at 279.535 kb on + strand at 279.687 kb on - strand, within hxpB at 279.687 kb on - strand, within hxpB at 279.687 kb on - strand, within hxpB at 279.688 kb on + strand, within hxpB at 279.689 kb on - strand, within hxpB at 279.689 kb on - strand, within hxpB at 279.689 kb on - strand, within hxpB at 279.711 kb on - strand, within hxpB at 279.786 kb on + strand, within hxpB at 279.786 kb on + strand, within hxpB at 279.790 kb on + strand, within hxpB at 279.790 kb on + strand, within hxpB at 279.869 kb on - strand, within hxpB at 279.919 kb on + strand, within hxpB at 279.963 kb on - strand, within hxpB at 279.998 kb on - strand, within hxpB at 280.093 kb on - strand at 280.108 kb on - strand at 280.108 kb on - strand at 280.148 kb on - strand at 280.148 kb on - strand at 280.169 kb on + strand at 280.169 kb on + strand at 280.169 kb on + strand at 280.169 kb on + strand at 280.169 kb on + strand at 280.170 kb on - strand at 280.170 kb on - strand at 280.170 kb on - strand at 280.170 kb on - strand at 280.181 kb on - strand at 280.184 kb on - strand at 280.247 kb on + strand at 280.247 kb on + strand at 280.248 kb on - strand at 280.254 kb on - strand at 280.258 kb on + strand at 280.259 kb on - strand at 280.277 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 277,774 - tcyP JDDGAC_01580 0.41 -1.7 277,907 - tcyP JDDGAC_01580 0.51 -1.4 278,032 - tcyP JDDGAC_01580 0.60 +0.1 278,133 - tcyP JDDGAC_01580 0.67 -2.2 278,133 - tcyP JDDGAC_01580 0.67 +0.9 278,133 - tcyP JDDGAC_01580 0.67 -1.1 278,133 - tcyP JDDGAC_01580 0.67 +0.1 278,133 - tcyP JDDGAC_01580 0.67 +0.4 278,133 - tcyP JDDGAC_01580 0.67 +1.0 278,137 - tcyP JDDGAC_01580 0.67 +0.5 278,137 - tcyP JDDGAC_01580 0.67 +0.1 278,262 + tcyP JDDGAC_01580 0.76 +2.3 278,263 - tcyP JDDGAC_01580 0.76 +1.8 278,398 - tcyP JDDGAC_01580 0.86 +1.3 278,419 - tcyP JDDGAC_01580 0.88 -1.4 278,521 - +2.2 278,614 - +1.2 278,614 - +2.0 278,638 + -0.0 278,745 + -0.0 278,745 + +0.2 278,748 + +1.6 278,749 - +0.5 278,776 - +0.1 278,974 + ybcI JDDGAC_01585 0.42 -2.3 278,975 - ybcI JDDGAC_01585 0.42 +1.1 279,216 + ybcI JDDGAC_01585 0.83 -0.4 279,217 - ybcI JDDGAC_01585 0.83 -1.0 279,285 + +1.3 279,318 + +2.7 279,535 + -1.5 279,535 + +0.6 279,687 - hxpB JDDGAC_01590 0.31 -0.0 279,687 - hxpB JDDGAC_01590 0.31 -0.1 279,687 - hxpB JDDGAC_01590 0.31 +0.2 279,688 + hxpB JDDGAC_01590 0.31 +1.3 279,689 - hxpB JDDGAC_01590 0.32 +2.0 279,689 - hxpB JDDGAC_01590 0.32 -0.1 279,689 - hxpB JDDGAC_01590 0.32 +1.3 279,711 - hxpB JDDGAC_01590 0.35 +1.1 279,786 + hxpB JDDGAC_01590 0.46 +0.1 279,786 + hxpB JDDGAC_01590 0.46 +0.6 279,790 + hxpB JDDGAC_01590 0.47 +0.1 279,790 + hxpB JDDGAC_01590 0.47 -0.9 279,869 - hxpB JDDGAC_01590 0.58 -0.9 279,919 + hxpB JDDGAC_01590 0.66 -0.1 279,963 - hxpB JDDGAC_01590 0.72 -1.3 279,998 - hxpB JDDGAC_01590 0.78 +1.6 280,093 - -1.6 280,108 - -0.3 280,108 - -1.1 280,148 - -0.6 280,148 - -1.1 280,169 + -0.6 280,169 + -0.3 280,169 + +3.6 280,169 + +0.4 280,169 + -1.7 280,170 - +0.7 280,170 - -1.5 280,170 - -0.9 280,170 - -0.1 280,181 - -0.5 280,184 - -1.7 280,247 + +0.1 280,247 + -1.1 280,248 - -1.2 280,254 - -0.5 280,258 + -0.3 280,259 - +1.0 280,277 + -1.1
Or see this region's nucleotide sequence