Experiment: R2A_PIPES with Zinc chloride 2560 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03590 and LRK53_RS03595 are separated by 22 nucleotides LRK53_RS03595 and LRK53_RS03600 are separated by 110 nucleotides LRK53_RS03600 and LRK53_RS03605 are separated by 250 nucleotides
LRK53_RS03590: LRK53_RS03590 - thymidine kinase, at 848,767 to 849,399
_RS03590
LRK53_RS03595: LRK53_RS03595 - hypothetical protein, at 849,422 to 850,189
_RS03595
LRK53_RS03600: LRK53_RS03600 - nitroreductase family protein, at 850,300 to 850,899
_RS03600
LRK53_RS03605: LRK53_RS03605 - bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase, at 851,150 to 851,977
_RS03605
Position (kb) 850
851 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 849.301 kb on + strand, within LRK53_RS03590 at 849.301 kb on + strand, within LRK53_RS03590 at 849.301 kb on + strand, within LRK53_RS03590 at 849.301 kb on + strand, within LRK53_RS03590 at 849.301 kb on + strand, within LRK53_RS03590 at 849.301 kb on + strand, within LRK53_RS03590 at 849.301 kb on + strand, within LRK53_RS03590 at 849.301 kb on + strand, within LRK53_RS03590 at 849.301 kb on + strand, within LRK53_RS03590 at 850.451 kb on + strand, within LRK53_RS03600 at 850.451 kb on + strand, within LRK53_RS03600 at 850.451 kb on + strand, within LRK53_RS03600 at 850.451 kb on + strand, within LRK53_RS03600 at 850.451 kb on + strand, within LRK53_RS03600 at 850.451 kb on + strand, within LRK53_RS03600 at 850.451 kb on + strand, within LRK53_RS03600 at 850.451 kb on + strand, within LRK53_RS03600 at 850.451 kb on + strand, within LRK53_RS03600 at 850.451 kb on + strand, within LRK53_RS03600 at 850.451 kb on + strand, within LRK53_RS03600 at 850.451 kb on + strand, within LRK53_RS03600 at 850.451 kb on + strand, within LRK53_RS03600 at 850.451 kb on + strand, within LRK53_RS03600 at 850.451 kb on + strand, within LRK53_RS03600 at 850.451 kb on + strand, within LRK53_RS03600 at 850.451 kb on + strand, within LRK53_RS03600 at 850.451 kb on + strand, within LRK53_RS03600 at 850.451 kb on + strand, within LRK53_RS03600 at 850.451 kb on + strand, within LRK53_RS03600 at 850.452 kb on - strand, within LRK53_RS03600 at 850.452 kb on - strand, within LRK53_RS03600 at 850.452 kb on - strand, within LRK53_RS03600 at 850.452 kb on - strand, within LRK53_RS03600 at 850.452 kb on - strand, within LRK53_RS03600 at 850.452 kb on - strand, within LRK53_RS03600 at 850.452 kb on - strand, within LRK53_RS03600 at 850.452 kb on - strand, within LRK53_RS03600 at 850.452 kb on - strand, within LRK53_RS03600 at 850.452 kb on - strand, within LRK53_RS03600 at 850.452 kb on - strand, within LRK53_RS03600 at 850.452 kb on - strand, within LRK53_RS03600 at 850.452 kb on - strand, within LRK53_RS03600 at 850.452 kb on - strand, within LRK53_RS03600 at 850.452 kb on - strand, within LRK53_RS03600 at 850.452 kb on - strand, within LRK53_RS03600 at 850.452 kb on - strand, within LRK53_RS03600 at 850.452 kb on - strand, within LRK53_RS03600 at 850.452 kb on - strand, within LRK53_RS03600 at 850.556 kb on + strand, within LRK53_RS03600 at 850.556 kb on + strand, within LRK53_RS03600 at 850.557 kb on - strand, within LRK53_RS03600 at 850.557 kb on - strand, within LRK53_RS03600 at 850.557 kb on - strand, within LRK53_RS03600 at 850.604 kb on + strand, within LRK53_RS03600 at 850.604 kb on + strand, within LRK53_RS03600 at 850.605 kb on - strand, within LRK53_RS03600 at 850.834 kb on + strand, within LRK53_RS03600 at 850.834 kb on + strand, within LRK53_RS03600 at 850.834 kb on + strand, within LRK53_RS03600 at 850.835 kb on - strand, within LRK53_RS03600 at 850.835 kb on - strand, within LRK53_RS03600 at 850.835 kb on - strand, within LRK53_RS03600 at 850.835 kb on - strand, within LRK53_RS03600 at 850.835 kb on - strand, within LRK53_RS03600 at 850.835 kb on - strand, within LRK53_RS03600 at 850.835 kb on - strand, within LRK53_RS03600 at 850.835 kb on - strand, within LRK53_RS03600 at 850.853 kb on + strand at 851.057 kb on + strand at 851.057 kb on + strand at 851.057 kb on + strand at 851.057 kb on + strand at 851.057 kb on + strand at 851.057 kb on + strand at 851.057 kb on + strand at 851.058 kb on - strand at 851.058 kb on - strand at 851.058 kb on - strand at 851.058 kb on - strand at 851.058 kb on - strand at 851.058 kb on - strand at 851.058 kb on - strand at 851.058 kb on - strand at 851.058 kb on - strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.062 kb on + strand at 851.063 kb on - strand at 851.063 kb on - strand at 851.063 kb on - strand at 851.063 kb on - strand at 851.063 kb on - strand at 851.063 kb on - strand at 851.063 kb on - strand at 851.063 kb on - strand at 851.063 kb on - strand at 851.063 kb on - strand at 851.063 kb on - strand at 851.084 kb on + strand at 851.084 kb on + strand at 851.084 kb on + strand at 851.085 kb on - strand at 851.103 kb on - strand at 851.250 kb on + strand, within LRK53_RS03605 at 851.250 kb on + strand, within LRK53_RS03605 at 851.250 kb on + strand, within LRK53_RS03605 at 851.251 kb on - strand, within LRK53_RS03605 at 851.274 kb on + strand, within LRK53_RS03605 at 851.274 kb on + strand, within LRK53_RS03605 at 851.275 kb on - strand, within LRK53_RS03605 at 851.377 kb on - strand, within LRK53_RS03605 at 851.448 kb on + strand, within LRK53_RS03605 at 851.448 kb on + strand, within LRK53_RS03605 at 851.448 kb on + strand, within LRK53_RS03605 at 851.448 kb on + strand, within LRK53_RS03605 at 851.449 kb on - strand, within LRK53_RS03605 at 851.449 kb on - strand, within LRK53_RS03605 at 851.449 kb on - strand, within LRK53_RS03605 at 851.449 kb on - strand, within LRK53_RS03605 at 851.449 kb on - strand, within LRK53_RS03605 at 851.802 kb on + strand, within LRK53_RS03605 at 851.802 kb on + strand, within LRK53_RS03605 at 851.802 kb on + strand, within LRK53_RS03605 at 851.802 kb on + strand, within LRK53_RS03605 at 851.802 kb on + strand, within LRK53_RS03605 at 851.802 kb on + strand, within LRK53_RS03605 at 851.802 kb on + strand, within LRK53_RS03605 at 851.802 kb on + strand, within LRK53_RS03605 at 851.802 kb on + strand, within LRK53_RS03605 at 851.802 kb on + strand, within LRK53_RS03605 at 851.802 kb on + strand, within LRK53_RS03605 at 851.803 kb on - strand, within LRK53_RS03605 at 851.803 kb on - strand, within LRK53_RS03605 at 851.803 kb on - strand, within LRK53_RS03605 at 851.803 kb on - strand, within LRK53_RS03605 at 851.803 kb on - strand, within LRK53_RS03605 at 851.803 kb on - strand, within LRK53_RS03605 at 851.803 kb on - strand, within LRK53_RS03605 at 851.803 kb on - strand, within LRK53_RS03605
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Zinc chloride 2560 uM remove 849,301 + LRK53_RS03590 0.84 -1.8 849,301 + LRK53_RS03590 0.84 -0.1 849,301 + LRK53_RS03590 0.84 +0.9 849,301 + LRK53_RS03590 0.84 +0.4 849,301 + LRK53_RS03590 0.84 -1.4 849,301 + LRK53_RS03590 0.84 -0.4 849,301 + LRK53_RS03590 0.84 -1.1 849,301 + LRK53_RS03590 0.84 -0.6 849,301 + LRK53_RS03590 0.84 -1.1 850,451 + LRK53_RS03600 0.25 -0.2 850,451 + LRK53_RS03600 0.25 -0.1 850,451 + LRK53_RS03600 0.25 -1.1 850,451 + LRK53_RS03600 0.25 -0.9 850,451 + LRK53_RS03600 0.25 +0.2 850,451 + LRK53_RS03600 0.25 -0.1 850,451 + LRK53_RS03600 0.25 +0.8 850,451 + LRK53_RS03600 0.25 -0.8 850,451 + LRK53_RS03600 0.25 -1.1 850,451 + LRK53_RS03600 0.25 +1.5 850,451 + LRK53_RS03600 0.25 -0.6 850,451 + LRK53_RS03600 0.25 -0.1 850,451 + LRK53_RS03600 0.25 -0.6 850,451 + LRK53_RS03600 0.25 -0.3 850,451 + LRK53_RS03600 0.25 -0.3 850,451 + LRK53_RS03600 0.25 -0.6 850,451 + LRK53_RS03600 0.25 -0.0 850,451 + LRK53_RS03600 0.25 -1.5 850,451 + LRK53_RS03600 0.25 +0.9 850,451 + LRK53_RS03600 0.25 -0.6 850,452 - LRK53_RS03600 0.25 -1.4 850,452 - LRK53_RS03600 0.25 -0.1 850,452 - LRK53_RS03600 0.25 -0.1 850,452 - LRK53_RS03600 0.25 -1.4 850,452 - LRK53_RS03600 0.25 +0.9 850,452 - LRK53_RS03600 0.25 +0.9 850,452 - LRK53_RS03600 0.25 -0.1 850,452 - LRK53_RS03600 0.25 -2.8 850,452 - LRK53_RS03600 0.25 -0.1 850,452 - LRK53_RS03600 0.25 -0.4 850,452 - LRK53_RS03600 0.25 -0.6 850,452 - LRK53_RS03600 0.25 -0.1 850,452 - LRK53_RS03600 0.25 +0.9 850,452 - LRK53_RS03600 0.25 -0.6 850,452 - LRK53_RS03600 0.25 -1.4 850,452 - LRK53_RS03600 0.25 -0.6 850,452 - LRK53_RS03600 0.25 +0.9 850,452 - LRK53_RS03600 0.25 -0.6 850,452 - LRK53_RS03600 0.25 +0.9 850,556 + LRK53_RS03600 0.43 -0.6 850,556 + LRK53_RS03600 0.43 -0.1 850,557 - LRK53_RS03600 0.43 -1.1 850,557 - LRK53_RS03600 0.43 -1.4 850,557 - LRK53_RS03600 0.43 -0.4 850,604 + LRK53_RS03600 0.51 -2.5 850,604 + LRK53_RS03600 0.51 -0.1 850,605 - LRK53_RS03600 0.51 -0.1 850,834 + LRK53_RS03600 0.89 +1.3 850,834 + LRK53_RS03600 0.89 +0.1 850,834 + LRK53_RS03600 0.89 -2.1 850,835 - LRK53_RS03600 0.89 -0.5 850,835 - LRK53_RS03600 0.89 +0.9 850,835 - LRK53_RS03600 0.89 +0.1 850,835 - LRK53_RS03600 0.89 -1.1 850,835 - LRK53_RS03600 0.89 +2.5 850,835 - LRK53_RS03600 0.89 -1.6 850,835 - LRK53_RS03600 0.89 -0.2 850,835 - LRK53_RS03600 0.89 +0.5 850,853 + +0.2 851,057 + +0.9 851,057 + -1.4 851,057 + -0.1 851,057 + -0.1 851,057 + -0.4 851,057 + -0.1 851,057 + -0.1 851,058 - +0.4 851,058 - +0.5 851,058 - -1.1 851,058 - -1.1 851,058 - -0.2 851,058 - -2.5 851,058 - -0.1 851,058 - -0.6 851,058 - -0.6 851,062 + -0.6 851,062 + +1.2 851,062 + -0.1 851,062 + -0.6 851,062 + +0.1 851,062 + -1.4 851,062 + -0.4 851,062 + -0.1 851,062 + -0.1 851,062 + -0.3 851,062 + -0.6 851,062 + -0.6 851,062 + -0.6 851,062 + -1.2 851,062 + -0.6 851,062 + -0.9 851,062 + -0.1 851,062 + -0.9 851,063 - -0.1 851,063 - -1.2 851,063 - -0.1 851,063 - -0.1 851,063 - -1.0 851,063 - -0.1 851,063 - -0.3 851,063 - -1.0 851,063 - +0.2 851,063 - +0.2 851,063 - +0.7 851,084 + -2.7 851,084 + +0.5 851,084 + +1.9 851,085 - -0.1 851,103 - -0.1 851,250 + LRK53_RS03605 0.12 -1.1 851,250 + LRK53_RS03605 0.12 -1.4 851,250 + LRK53_RS03605 0.12 +0.6 851,251 - LRK53_RS03605 0.12 -1.0 851,274 + LRK53_RS03605 0.15 -0.6 851,274 + LRK53_RS03605 0.15 +1.4 851,275 - LRK53_RS03605 0.15 +0.9 851,377 - LRK53_RS03605 0.27 -1.5 851,448 + LRK53_RS03605 0.36 -0.1 851,448 + LRK53_RS03605 0.36 -0.1 851,448 + LRK53_RS03605 0.36 -2.1 851,448 + LRK53_RS03605 0.36 -1.4 851,449 - LRK53_RS03605 0.36 -1.2 851,449 - LRK53_RS03605 0.36 -0.6 851,449 - LRK53_RS03605 0.36 -0.1 851,449 - LRK53_RS03605 0.36 -0.6 851,449 - LRK53_RS03605 0.36 -0.6 851,802 + LRK53_RS03605 0.79 -0.1 851,802 + LRK53_RS03605 0.79 +0.4 851,802 + LRK53_RS03605 0.79 +0.9 851,802 + LRK53_RS03605 0.79 -1.4 851,802 + LRK53_RS03605 0.79 +0.9 851,802 + LRK53_RS03605 0.79 -1.1 851,802 + LRK53_RS03605 0.79 -1.9 851,802 + LRK53_RS03605 0.79 -0.9 851,802 + LRK53_RS03605 0.79 -1.4 851,802 + LRK53_RS03605 0.79 -0.1 851,802 + LRK53_RS03605 0.79 +0.9 851,803 - LRK53_RS03605 0.79 +0.9 851,803 - LRK53_RS03605 0.79 +0.2 851,803 - LRK53_RS03605 0.79 -2.2 851,803 - LRK53_RS03605 0.79 -1.3 851,803 - LRK53_RS03605 0.79 +0.9 851,803 - LRK53_RS03605 0.79 -1.6 851,803 - LRK53_RS03605 0.79 -0.1 851,803 - LRK53_RS03605 0.79 -0.6
Or see this region's nucleotide sequence