Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_09330

Experiment: G1M1_D9

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHUW76_09325 and HUW76_09330 are separated by 5 nucleotidesHUW76_09330 and HUW76_09335 are separated by 10 nucleotidesHUW76_09335 and HUW76_09340 are separated by 9 nucleotides HUW76_09325: HUW76_09325 - leucine--tRNA ligase, at 1,948,712 to 1,951,291 _09325 HUW76_09330: HUW76_09330 - sigma-70 family RNA polymerase sigma factor, at 1,951,297 to 1,951,911 _09330 HUW76_09335: HUW76_09335 - 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB, at 1,951,922 to 1,952,626 _09335 HUW76_09340: HUW76_09340 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 1,952,636 to 1,953,907 _09340 Position (kb) 1951 1952Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 1951.390 kb on - strand, within HUW76_09330at 1951.415 kb on - strand, within HUW76_09330at 1951.417 kb on - strand, within HUW76_09330at 1951.417 kb on - strand, within HUW76_09330at 1951.423 kb on - strand, within HUW76_09330at 1951.596 kb on - strand, within HUW76_09330at 1951.596 kb on - strand, within HUW76_09330at 1951.596 kb on - strand, within HUW76_09330at 1951.596 kb on - strand, within HUW76_09330at 1951.596 kb on - strand, within HUW76_09330at 1951.596 kb on - strand, within HUW76_09330at 1951.596 kb on - strand, within HUW76_09330at 1951.596 kb on - strand, within HUW76_09330at 1951.596 kb on - strand, within HUW76_09330at 1951.596 kb on - strand, within HUW76_09330at 1951.596 kb on - strand, within HUW76_09330at 1951.596 kb on - strand, within HUW76_09330at 1951.596 kb on - strand, within HUW76_09330at 1951.596 kb on - strand, within HUW76_09330at 1951.596 kb on - strand, within HUW76_09330at 1951.596 kb on - strand, within HUW76_09330at 1951.596 kb on - strand, within HUW76_09330at 1951.596 kb on - strand, within HUW76_09330at 1951.596 kb on - strand, within HUW76_09330at 1951.596 kb on - strand, within HUW76_09330at 1951.596 kb on - strand, within HUW76_09330at 1951.596 kb on - strand, within HUW76_09330at 1951.596 kb on - strand, within HUW76_09330at 1951.596 kb on - strand, within HUW76_09330at 1951.596 kb on - strand, within HUW76_09330at 1951.596 kb on - strand, within HUW76_09330at 1951.596 kb on - strand, within HUW76_09330at 1951.597 kb on - strand, within HUW76_09330at 1951.597 kb on - strand, within HUW76_09330at 1951.629 kb on - strand, within HUW76_09330at 1951.629 kb on - strand, within HUW76_09330at 1951.951 kb on - strandat 1951.951 kb on - strandat 1951.953 kb on - strandat 1951.953 kb on - strandat 1951.953 kb on - strandat 1951.953 kb on - strandat 1951.953 kb on - strandat 1951.956 kb on - strandat 1952.180 kb on - strand, within HUW76_09335at 1952.180 kb on - strand, within HUW76_09335at 1952.304 kb on - strand, within HUW76_09335at 1952.304 kb on - strand, within HUW76_09335at 1952.304 kb on - strand, within HUW76_09335at 1952.352 kb on - strand, within HUW76_09335at 1952.352 kb on - strand, within HUW76_09335at 1952.396 kb on - strand, within HUW76_09335at 1952.396 kb on - strand, within HUW76_09335at 1952.407 kb on - strand, within HUW76_09335at 1952.407 kb on - strand, within HUW76_09335at 1952.435 kb on - strand, within HUW76_09335at 1952.435 kb on - strand, within HUW76_09335at 1952.445 kb on - strand, within HUW76_09335at 1952.445 kb on - strand, within HUW76_09335at 1952.445 kb on - strand, within HUW76_09335at 1952.445 kb on - strand, within HUW76_09335at 1952.480 kb on - strand, within HUW76_09335at 1952.533 kb on - strand, within HUW76_09335at 1952.540 kb on - strand, within HUW76_09335at 1952.551 kb on - strand, within HUW76_09335at 1952.551 kb on - strand, within HUW76_09335at 1952.551 kb on - strand, within HUW76_09335at 1952.551 kb on - strand, within HUW76_09335at 1952.559 kb on - strandat 1952.619 kb on - strandat 1952.619 kb on - strandat 1952.619 kb on - strandat 1952.619 kb on - strandat 1952.619 kb on - strandat 1952.619 kb on - strandat 1952.619 kb on - strandat 1952.619 kb on - strandat 1952.642 kb on - strandat 1952.642 kb on - strandat 1952.642 kb on - strandat 1952.642 kb on - strandat 1952.642 kb on - strandat 1952.642 kb on - strandat 1952.642 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction G1M1_D9
remove
1,951,390 - HUW76_09330 0.15 -3.8
1,951,415 - HUW76_09330 0.19 -1.7
1,951,417 - HUW76_09330 0.20 -1.6
1,951,417 - HUW76_09330 0.20 -1.4
1,951,423 - HUW76_09330 0.20 -4.2
1,951,596 - HUW76_09330 0.49 -1.0
1,951,596 - HUW76_09330 0.49 -3.8
1,951,596 - HUW76_09330 0.49 -2.0
1,951,596 - HUW76_09330 0.49 -4.8
1,951,596 - HUW76_09330 0.49 -2.3
1,951,596 - HUW76_09330 0.49 -0.6
1,951,596 - HUW76_09330 0.49 -2.8
1,951,596 - HUW76_09330 0.49 -3.2
1,951,596 - HUW76_09330 0.49 -2.0
1,951,596 - HUW76_09330 0.49 -2.1
1,951,596 - HUW76_09330 0.49 -1.9
1,951,596 - HUW76_09330 0.49 -0.7
1,951,596 - HUW76_09330 0.49 -1.9
1,951,596 - HUW76_09330 0.49 -1.7
1,951,596 - HUW76_09330 0.49 -1.5
1,951,596 - HUW76_09330 0.49 -4.9
1,951,596 - HUW76_09330 0.49 -2.5
1,951,596 - HUW76_09330 0.49 -2.3
1,951,596 - HUW76_09330 0.49 -3.2
1,951,596 - HUW76_09330 0.49 -0.5
1,951,596 - HUW76_09330 0.49 -5.0
1,951,596 - HUW76_09330 0.49 -3.6
1,951,596 - HUW76_09330 0.49 -3.9
1,951,596 - HUW76_09330 0.49 -4.5
1,951,596 - HUW76_09330 0.49 -1.8
1,951,596 - HUW76_09330 0.49 -2.0
1,951,596 - HUW76_09330 0.49 -3.1
1,951,597 - HUW76_09330 0.49 -3.5
1,951,597 - HUW76_09330 0.49 -2.1
1,951,629 - HUW76_09330 0.54 -3.3
1,951,629 - HUW76_09330 0.54 -0.4
1,951,951 - +0.1
1,951,951 - +0.6
1,951,953 - +1.3
1,951,953 - -0.7
1,951,953 - +0.2
1,951,953 - +1.2
1,951,953 - +3.8
1,951,956 - -0.4
1,952,180 - HUW76_09335 0.37 +0.0
1,952,180 - HUW76_09335 0.37 -0.5
1,952,304 - HUW76_09335 0.54 -2.5
1,952,304 - HUW76_09335 0.54 -2.5
1,952,304 - HUW76_09335 0.54 -0.2
1,952,352 - HUW76_09335 0.61 -0.5
1,952,352 - HUW76_09335 0.61 -1.7
1,952,396 - HUW76_09335 0.67 +1.9
1,952,396 - HUW76_09335 0.67 -2.4
1,952,407 - HUW76_09335 0.69 -0.7
1,952,407 - HUW76_09335 0.69 -1.2
1,952,435 - HUW76_09335 0.73 +0.3
1,952,435 - HUW76_09335 0.73 -2.0
1,952,445 - HUW76_09335 0.74 -1.9
1,952,445 - HUW76_09335 0.74 +1.7
1,952,445 - HUW76_09335 0.74 +0.2
1,952,445 - HUW76_09335 0.74 +0.5
1,952,480 - HUW76_09335 0.79 -0.6
1,952,533 - HUW76_09335 0.87 -1.9
1,952,540 - HUW76_09335 0.88 +1.2
1,952,551 - HUW76_09335 0.89 -0.9
1,952,551 - HUW76_09335 0.89 +0.8
1,952,551 - HUW76_09335 0.89 -0.7
1,952,551 - HUW76_09335 0.89 +0.8
1,952,559 - -1.0
1,952,619 - -1.1
1,952,619 - -1.6
1,952,619 - -0.7
1,952,619 - +0.5
1,952,619 - +0.3
1,952,619 - -0.5
1,952,619 - -2.7
1,952,619 - -0.4
1,952,642 - +0.4
1,952,642 - -0.4
1,952,642 - +0.4
1,952,642 - +0.0
1,952,642 - -0.7
1,952,642 - +0.8
1,952,642 - +0.0

Or see this region's nucleotide sequence