Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_03605

Experiment: G1M1_D9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_03590 and HUW76_03595 are separated by 12 nucleotidesHUW76_03595 and HUW76_03600 are separated by 207 nucleotidesHUW76_03600 and HUW76_03605 are separated by 1 nucleotidesHUW76_03605 and HUW76_03610 are separated by 129 nucleotidesHUW76_03610 and HUW76_03615 overlap by 8 nucleotides HUW76_03590: HUW76_03590 - tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA, at 717,894 to 718,925 _03590 HUW76_03595: HUW76_03595 - 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD, at 718,938 to 719,486 _03595 HUW76_03600: HUW76_03600 - exodeoxyribonuclease VII small subunit, at 719,694 to 719,906 _03600 HUW76_03605: HUW76_03605 - polyprenyl synthetase family protein, at 719,908 to 720,801 _03605 HUW76_03610: HUW76_03610 - isoprenyl transferase, at 720,931 to 721,623 _03610 HUW76_03615: HUW76_03615 - phosphatidate cytidylyltransferase, at 721,616 to 722,506 _03615 Position (kb) 719 720 721Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 718.924 kb on + strandat 718.924 kb on + strandat 719.017 kb on + strand, within HUW76_03595at 719.019 kb on + strand, within HUW76_03595at 719.053 kb on + strand, within HUW76_03595at 719.094 kb on - strand, within HUW76_03595at 719.106 kb on - strand, within HUW76_03595at 719.106 kb on - strand, within HUW76_03595at 719.120 kb on - strand, within HUW76_03595at 719.120 kb on - strand, within HUW76_03595at 719.192 kb on + strand, within HUW76_03595at 719.212 kb on + strand, within HUW76_03595at 719.212 kb on + strand, within HUW76_03595at 719.212 kb on + strand, within HUW76_03595at 719.212 kb on + strand, within HUW76_03595at 719.212 kb on + strand, within HUW76_03595at 719.212 kb on + strand, within HUW76_03595at 719.212 kb on + strand, within HUW76_03595at 719.212 kb on + strand, within HUW76_03595at 719.212 kb on + strand, within HUW76_03595at 719.212 kb on + strand, within HUW76_03595at 719.212 kb on + strand, within HUW76_03595at 719.212 kb on + strand, within HUW76_03595at 719.212 kb on + strand, within HUW76_03595at 719.220 kb on - strand, within HUW76_03595at 719.220 kb on - strand, within HUW76_03595at 719.237 kb on + strand, within HUW76_03595at 719.237 kb on + strand, within HUW76_03595at 719.308 kb on + strand, within HUW76_03595at 719.308 kb on + strand, within HUW76_03595at 719.309 kb on + strand, within HUW76_03595at 719.312 kb on - strand, within HUW76_03595at 719.373 kb on + strand, within HUW76_03595at 719.538 kb on - strandat 719.549 kb on + strandat 719.549 kb on + strandat 719.550 kb on + strandat 719.550 kb on + strandat 719.569 kb on + strandat 719.587 kb on + strandat 719.587 kb on + strandat 719.587 kb on + strandat 719.588 kb on - strandat 719.588 kb on - strandat 719.595 kb on - strandat 719.602 kb on + strandat 719.602 kb on + strandat 719.609 kb on - strandat 719.686 kb on - strandat 719.686 kb on - strandat 719.688 kb on + strandat 719.765 kb on + strand, within HUW76_03600at 719.765 kb on + strand, within HUW76_03600at 719.765 kb on + strand, within HUW76_03600at 719.890 kb on + strandat 720.010 kb on + strand, within HUW76_03605at 720.034 kb on + strand, within HUW76_03605at 720.071 kb on + strand, within HUW76_03605at 720.079 kb on - strand, within HUW76_03605at 720.079 kb on - strand, within HUW76_03605at 720.079 kb on - strand, within HUW76_03605at 720.089 kb on - strand, within HUW76_03605at 720.103 kb on + strand, within HUW76_03605at 720.111 kb on - strand, within HUW76_03605at 720.119 kb on - strand, within HUW76_03605at 720.119 kb on - strand, within HUW76_03605at 720.128 kb on + strand, within HUW76_03605at 720.170 kb on - strand, within HUW76_03605at 720.170 kb on - strand, within HUW76_03605at 720.177 kb on - strand, within HUW76_03605at 720.186 kb on + strand, within HUW76_03605at 720.217 kb on + strand, within HUW76_03605at 720.217 kb on - strand, within HUW76_03605at 720.217 kb on - strand, within HUW76_03605at 720.225 kb on - strand, within HUW76_03605at 720.263 kb on - strand, within HUW76_03605at 720.264 kb on - strand, within HUW76_03605at 720.264 kb on - strand, within HUW76_03605at 720.316 kb on - strand, within HUW76_03605at 720.316 kb on - strand, within HUW76_03605at 720.316 kb on - strand, within HUW76_03605at 720.316 kb on - strand, within HUW76_03605at 720.316 kb on - strand, within HUW76_03605at 720.316 kb on - strand, within HUW76_03605at 720.425 kb on + strand, within HUW76_03605at 720.425 kb on + strand, within HUW76_03605at 720.536 kb on + strand, within HUW76_03605at 720.536 kb on + strand, within HUW76_03605at 720.539 kb on - strand, within HUW76_03605at 720.564 kb on + strand, within HUW76_03605at 720.616 kb on + strand, within HUW76_03605at 720.616 kb on + strand, within HUW76_03605at 720.623 kb on + strand, within HUW76_03605at 720.624 kb on - strand, within HUW76_03605at 720.624 kb on - strand, within HUW76_03605at 720.634 kb on + strand, within HUW76_03605at 720.634 kb on + strand, within HUW76_03605at 720.647 kb on - strand, within HUW76_03605at 720.661 kb on + strand, within HUW76_03605at 720.661 kb on + strand, within HUW76_03605at 720.668 kb on + strand, within HUW76_03605at 720.668 kb on + strand, within HUW76_03605at 720.673 kb on + strand, within HUW76_03605at 720.693 kb on + strand, within HUW76_03605at 720.829 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction G1M1_D9
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718,924 + +0.2
718,924 + +1.0
719,017 + HUW76_03595 0.14 -0.5
719,019 + HUW76_03595 0.15 -0.8
719,053 + HUW76_03595 0.21 -1.2
719,094 - HUW76_03595 0.28 -0.0
719,106 - HUW76_03595 0.31 -1.2
719,106 - HUW76_03595 0.31 -3.0
719,120 - HUW76_03595 0.33 -0.5
719,120 - HUW76_03595 0.33 -2.1
719,192 + HUW76_03595 0.46 -2.0
719,212 + HUW76_03595 0.50 +0.6
719,212 + HUW76_03595 0.50 +1.5
719,212 + HUW76_03595 0.50 -1.3
719,212 + HUW76_03595 0.50 -1.1
719,212 + HUW76_03595 0.50 -1.2
719,212 + HUW76_03595 0.50 +0.5
719,212 + HUW76_03595 0.50 -0.0
719,212 + HUW76_03595 0.50 -1.3
719,212 + HUW76_03595 0.50 -0.4
719,212 + HUW76_03595 0.50 -2.2
719,212 + HUW76_03595 0.50 -0.3
719,212 + HUW76_03595 0.50 -0.7
719,212 + HUW76_03595 0.50 -2.8
719,220 - HUW76_03595 0.51 -0.9
719,220 - HUW76_03595 0.51 -0.7
719,237 + HUW76_03595 0.54 -0.8
719,237 + HUW76_03595 0.54 -2.4
719,308 + HUW76_03595 0.67 -0.6
719,308 + HUW76_03595 0.67 -0.7
719,309 + HUW76_03595 0.68 -0.4
719,312 - HUW76_03595 0.68 -2.0
719,373 + HUW76_03595 0.79 -1.1
719,538 - -1.7
719,549 + -0.5
719,549 + +0.3
719,550 + -0.4
719,550 + -0.6
719,569 + -0.9
719,587 + -1.2
719,587 + -0.2
719,587 + -0.9
719,588 - -2.4
719,588 - -1.1
719,595 - -2.4
719,602 + -0.5
719,602 + -0.7
719,609 - -0.1
719,686 - -0.5
719,686 - -0.5
719,688 + -2.8
719,765 + HUW76_03600 0.33 +0.1
719,765 + HUW76_03600 0.33 +0.5
719,765 + HUW76_03600 0.33 +0.8
719,890 + -0.2
720,010 + HUW76_03605 0.11 -2.6
720,034 + HUW76_03605 0.14 -2.2
720,071 + HUW76_03605 0.18 -1.2
720,079 - HUW76_03605 0.19 -0.2
720,079 - HUW76_03605 0.19 -1.4
720,079 - HUW76_03605 0.19 -0.9
720,089 - HUW76_03605 0.20 -2.5
720,103 + HUW76_03605 0.22 -0.8
720,111 - HUW76_03605 0.23 +0.2
720,119 - HUW76_03605 0.24 -1.4
720,119 - HUW76_03605 0.24 -1.9
720,128 + HUW76_03605 0.25 -1.7
720,170 - HUW76_03605 0.29 -1.6
720,170 - HUW76_03605 0.29 -1.2
720,177 - HUW76_03605 0.30 -0.9
720,186 + HUW76_03605 0.31 -0.8
720,217 + HUW76_03605 0.35 +0.1
720,217 - HUW76_03605 0.35 +2.4
720,217 - HUW76_03605 0.35 -0.4
720,225 - HUW76_03605 0.35 -2.0
720,263 - HUW76_03605 0.40 -1.3
720,264 - HUW76_03605 0.40 -0.5
720,264 - HUW76_03605 0.40 -1.5
720,316 - HUW76_03605 0.46 -3.2
720,316 - HUW76_03605 0.46 -0.2
720,316 - HUW76_03605 0.46 -1.7
720,316 - HUW76_03605 0.46 -1.6
720,316 - HUW76_03605 0.46 -1.7
720,316 - HUW76_03605 0.46 -0.5
720,425 + HUW76_03605 0.58 -3.7
720,425 + HUW76_03605 0.58 -0.6
720,536 + HUW76_03605 0.70 -1.5
720,536 + HUW76_03605 0.70 -1.9
720,539 - HUW76_03605 0.71 -1.1
720,564 + HUW76_03605 0.73 -0.9
720,616 + HUW76_03605 0.79 -3.3
720,616 + HUW76_03605 0.79 -1.2
720,623 + HUW76_03605 0.80 -2.0
720,624 - HUW76_03605 0.80 +0.9
720,624 - HUW76_03605 0.80 +0.2
720,634 + HUW76_03605 0.81 -0.6
720,634 + HUW76_03605 0.81 -1.9
720,647 - HUW76_03605 0.83 -1.9
720,661 + HUW76_03605 0.84 -1.2
720,661 + HUW76_03605 0.84 -0.5
720,668 + HUW76_03605 0.85 -1.6
720,668 + HUW76_03605 0.85 -2.9
720,673 + HUW76_03605 0.86 -1.7
720,693 + HUW76_03605 0.88 -0.4
720,829 + -0.6

Or see this region's nucleotide sequence