Experiment: G1M1_D9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HUW76_00215 and HUW76_00220 are separated by 123 nucleotides HUW76_00220 and HUW76_00225 are separated by 135 nucleotides HUW76_00225 and HUW76_00230 are separated by 79 nucleotides HUW76_00230 and HUW76_00235 are separated by 471 nucleotides HUW76_00235 and HUW76_00240 are separated by 147 nucleotides
HUW76_00215: HUW76_00215 - AAA family ATPase, at 43,163 to 44,794
_00215
HUW76_00220: HUW76_00220 - PepSY domain-containing protein, at 44,918 to 45,202
_00220
HUW76_00225: HUW76_00225 - PD-(D/E)XK nuclease domain-containing protein, at 45,338 to 45,556
_00225
HUW76_00230: HUW76_00230 - flavocytochrome c, at 45,636 to 47,357
_00230
HUW76_00235: HUW76_00235 - arsenate reductase family protein, at 47,829 to 48,191
_00235
HUW76_00240: HUW76_00240 - branched-chain amino acid transport system II carrier protein, at 48,339 to 49,616
_00240
Position (kb) 45
46
47
48 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 44.813 kb on - strand at 44.831 kb on + strand at 44.831 kb on + strand at 44.831 kb on + strand at 44.835 kb on + strand at 44.835 kb on + strand at 44.842 kb on + strand at 44.845 kb on + strand at 44.845 kb on + strand at 44.852 kb on + strand at 44.852 kb on + strand at 44.852 kb on + strand at 44.852 kb on + strand at 44.853 kb on - strand at 44.957 kb on + strand, within HUW76_00220 at 44.958 kb on + strand, within HUW76_00220 at 44.958 kb on + strand, within HUW76_00220 at 45.026 kb on - strand, within HUW76_00220 at 45.026 kb on - strand, within HUW76_00220 at 45.107 kb on - strand, within HUW76_00220 at 45.132 kb on + strand, within HUW76_00220 at 45.132 kb on + strand, within HUW76_00220 at 45.144 kb on + strand, within HUW76_00220 at 45.144 kb on + strand, within HUW76_00220 at 45.213 kb on + strand at 45.213 kb on + strand at 45.221 kb on - strand at 45.222 kb on + strand at 45.222 kb on + strand at 45.338 kb on + strand at 45.343 kb on + strand at 45.343 kb on + strand at 45.343 kb on + strand at 45.343 kb on + strand at 45.343 kb on + strand at 45.343 kb on + strand at 45.351 kb on - strand at 45.486 kb on + strand, within HUW76_00225 at 45.486 kb on + strand, within HUW76_00225 at 45.501 kb on + strand, within HUW76_00225 at 45.540 kb on - strand at 45.596 kb on - strand at 45.596 kb on - strand at 45.598 kb on + strand at 45.603 kb on + strand at 45.611 kb on - strand at 45.675 kb on + strand at 45.683 kb on - strand at 45.683 kb on - strand at 45.683 kb on - strand at 45.690 kb on - strand at 45.695 kb on + strand at 45.695 kb on + strand at 45.719 kb on + strand at 45.719 kb on + strand at 45.719 kb on - strand at 45.719 kb on - strand at 45.727 kb on + strand at 45.727 kb on + strand at 45.732 kb on + strand at 45.732 kb on + strand at 45.732 kb on + strand at 45.732 kb on + strand at 45.732 kb on + strand at 45.732 kb on + strand at 45.732 kb on + strand at 45.732 kb on + strand at 45.740 kb on - strand at 45.740 kb on - strand at 45.740 kb on - strand at 45.740 kb on - strand at 45.740 kb on - strand at 45.740 kb on - strand at 45.740 kb on - strand at 45.745 kb on - strand at 45.745 kb on - strand at 45.746 kb on - strand at 45.746 kb on - strand at 45.759 kb on + strand at 45.767 kb on - strand at 45.767 kb on - strand at 45.767 kb on - strand at 45.888 kb on - strand, within HUW76_00230 at 45.888 kb on - strand, within HUW76_00230 at 45.888 kb on - strand, within HUW76_00230 at 45.916 kb on - strand, within HUW76_00230 at 45.961 kb on + strand, within HUW76_00230 at 45.972 kb on - strand, within HUW76_00230 at 45.972 kb on - strand, within HUW76_00230 at 45.978 kb on - strand, within HUW76_00230 at 45.987 kb on + strand, within HUW76_00230 at 45.987 kb on + strand, within HUW76_00230 at 45.995 kb on - strand, within HUW76_00230 at 45.995 kb on - strand, within HUW76_00230 at 45.995 kb on - strand, within HUW76_00230 at 46.051 kb on + strand, within HUW76_00230 at 46.051 kb on + strand, within HUW76_00230 at 46.064 kb on - strand, within HUW76_00230 at 46.064 kb on - strand, within HUW76_00230 at 46.064 kb on - strand, within HUW76_00230 at 46.090 kb on + strand, within HUW76_00230 at 46.098 kb on - strand, within HUW76_00230 at 46.157 kb on + strand, within HUW76_00230 at 46.165 kb on - strand, within HUW76_00230 at 46.207 kb on + strand, within HUW76_00230 at 46.207 kb on + strand, within HUW76_00230 at 46.207 kb on + strand, within HUW76_00230 at 46.207 kb on + strand, within HUW76_00230 at 46.207 kb on + strand, within HUW76_00230 at 46.215 kb on - strand, within HUW76_00230 at 46.215 kb on - strand, within HUW76_00230 at 46.227 kb on + strand, within HUW76_00230 at 46.227 kb on + strand, within HUW76_00230 at 46.341 kb on - strand, within HUW76_00230 at 46.341 kb on - strand, within HUW76_00230 at 46.365 kb on - strand, within HUW76_00230 at 46.372 kb on - strand, within HUW76_00230 at 46.375 kb on + strand, within HUW76_00230 at 46.375 kb on + strand, within HUW76_00230 at 46.399 kb on + strand, within HUW76_00230 at 46.468 kb on + strand, within HUW76_00230 at 46.475 kb on + strand, within HUW76_00230 at 46.537 kb on + strand, within HUW76_00230 at 46.541 kb on + strand, within HUW76_00230 at 46.544 kb on + strand, within HUW76_00230 at 46.549 kb on - strand, within HUW76_00230 at 46.549 kb on - strand, within HUW76_00230 at 46.550 kb on - strand, within HUW76_00230 at 46.550 kb on - strand, within HUW76_00230 at 46.571 kb on - strand, within HUW76_00230 at 46.636 kb on + strand, within HUW76_00230 at 46.643 kb on - strand, within HUW76_00230 at 46.643 kb on - strand, within HUW76_00230 at 46.644 kb on - strand, within HUW76_00230 at 46.644 kb on - strand, within HUW76_00230 at 46.644 kb on - strand, within HUW76_00230 at 46.644 kb on - strand, within HUW76_00230 at 46.663 kb on + strand, within HUW76_00230 at 46.712 kb on - strand, within HUW76_00230 at 46.712 kb on - strand, within HUW76_00230 at 46.743 kb on + strand, within HUW76_00230 at 46.744 kb on - strand, within HUW76_00230 at 46.744 kb on - strand, within HUW76_00230 at 46.749 kb on - strand, within HUW76_00230 at 46.763 kb on + strand, within HUW76_00230 at 46.779 kb on + strand, within HUW76_00230 at 46.779 kb on + strand, within HUW76_00230 at 46.792 kb on + strand, within HUW76_00230 at 46.792 kb on + strand, within HUW76_00230 at 46.825 kb on + strand, within HUW76_00230 at 46.825 kb on + strand, within HUW76_00230 at 46.862 kb on + strand, within HUW76_00230 at 46.943 kb on - strand, within HUW76_00230 at 46.943 kb on - strand, within HUW76_00230 at 47.052 kb on + strand, within HUW76_00230 at 47.052 kb on + strand, within HUW76_00230 at 47.145 kb on + strand, within HUW76_00230 at 47.145 kb on + strand, within HUW76_00230 at 47.174 kb on - strand, within HUW76_00230 at 47.174 kb on - strand, within HUW76_00230 at 47.182 kb on + strand, within HUW76_00230 at 47.182 kb on + strand, within HUW76_00230 at 47.184 kb on - strand, within HUW76_00230 at 47.264 kb on + strand at 47.264 kb on + strand at 47.264 kb on + strand at 47.264 kb on + strand at 47.599 kb on - strand at 47.632 kb on - strand at 47.632 kb on - strand at 47.641 kb on + strand at 47.641 kb on + strand at 47.649 kb on - strand at 47.729 kb on + strand at 47.729 kb on + strand at 47.729 kb on + strand at 47.811 kb on + strand at 47.811 kb on + strand at 47.919 kb on + strand, within HUW76_00235 at 47.919 kb on + strand, within HUW76_00235 at 47.939 kb on + strand, within HUW76_00235 at 47.945 kb on + strand, within HUW76_00235 at 48.134 kb on + strand, within HUW76_00235 at 48.134 kb on + strand, within HUW76_00235 at 48.151 kb on + strand, within HUW76_00235 at 48.151 kb on + strand, within HUW76_00235 at 48.159 kb on + strand at 48.240 kb on + strand at 48.243 kb on + strand at 48.243 kb on + strand at 48.243 kb on + strand at 48.254 kb on + strand at 48.276 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction G1M1_D9 remove 44,813 - -1.7 44,831 + +2.1 44,831 + +2.8 44,831 + +1.7 44,835 + +3.6 44,835 + +3.4 44,842 + +0.2 44,845 + -1.8 44,845 + -0.7 44,852 + -0.0 44,852 + -0.0 44,852 + +0.6 44,852 + +0.8 44,853 - -3.3 44,957 + HUW76_00220 0.14 +2.5 44,958 + HUW76_00220 0.14 +1.4 44,958 + HUW76_00220 0.14 +1.6 45,026 - HUW76_00220 0.38 +2.6 45,026 - HUW76_00220 0.38 +4.1 45,107 - HUW76_00220 0.66 +3.5 45,132 + HUW76_00220 0.75 +1.4 45,132 + HUW76_00220 0.75 +2.2 45,144 + HUW76_00220 0.79 +2.0 45,144 + HUW76_00220 0.79 +2.3 45,213 + +2.9 45,213 + +1.3 45,221 - +2.1 45,222 + +1.6 45,222 + +3.9 45,338 + +0.3 45,343 + -0.2 45,343 + +1.1 45,343 + +1.7 45,343 + -0.1 45,343 + +1.5 45,343 + +0.4 45,351 - +0.2 45,486 + HUW76_00225 0.68 +1.0 45,486 + HUW76_00225 0.68 +0.6 45,501 + HUW76_00225 0.74 -0.1 45,540 - +0.8 45,596 - +1.2 45,596 - -0.7 45,598 + -0.2 45,603 + +1.3 45,611 - +0.3 45,675 + +0.2 45,683 - -0.3 45,683 - -1.7 45,683 - -1.5 45,690 - +0.3 45,695 + +0.4 45,695 + +0.6 45,719 + +0.4 45,719 + +1.7 45,719 - +1.8 45,719 - +1.4 45,727 + +0.3 45,727 + +0.8 45,732 + +1.6 45,732 + +2.0 45,732 + -0.1 45,732 + -1.4 45,732 + +0.8 45,732 + +0.3 45,732 + +0.4 45,732 + +0.1 45,740 - +2.2 45,740 - -0.4 45,740 - +1.2 45,740 - -0.8 45,740 - +0.7 45,740 - +2.0 45,740 - +1.8 45,745 - -0.8 45,745 - -0.0 45,746 - +0.3 45,746 - +0.3 45,759 + -0.2 45,767 - +0.1 45,767 - -0.4 45,767 - -1.2 45,888 - HUW76_00230 0.15 +0.3 45,888 - HUW76_00230 0.15 -1.1 45,888 - HUW76_00230 0.15 -1.4 45,916 - HUW76_00230 0.16 -1.7 45,961 + HUW76_00230 0.19 -0.6 45,972 - HUW76_00230 0.20 -0.7 45,972 - HUW76_00230 0.20 +0.3 45,978 - HUW76_00230 0.20 +0.8 45,987 + HUW76_00230 0.20 -1.9 45,987 + HUW76_00230 0.20 +0.6 45,995 - HUW76_00230 0.21 -0.2 45,995 - HUW76_00230 0.21 +0.5 45,995 - HUW76_00230 0.21 -0.3 46,051 + HUW76_00230 0.24 +0.6 46,051 + HUW76_00230 0.24 -0.5 46,064 - HUW76_00230 0.25 -0.5 46,064 - HUW76_00230 0.25 +0.8 46,064 - HUW76_00230 0.25 +0.5 46,090 + HUW76_00230 0.26 -0.3 46,098 - HUW76_00230 0.27 +3.2 46,157 + HUW76_00230 0.30 +0.3 46,165 - HUW76_00230 0.31 -1.2 46,207 + HUW76_00230 0.33 -0.8 46,207 + HUW76_00230 0.33 +0.0 46,207 + HUW76_00230 0.33 +0.3 46,207 + HUW76_00230 0.33 -1.3 46,207 + HUW76_00230 0.33 +0.2 46,215 - HUW76_00230 0.34 -0.1 46,215 - HUW76_00230 0.34 +0.2 46,227 + HUW76_00230 0.34 -0.8 46,227 + HUW76_00230 0.34 -0.1 46,341 - HUW76_00230 0.41 +0.2 46,341 - HUW76_00230 0.41 -2.1 46,365 - HUW76_00230 0.42 -0.7 46,372 - HUW76_00230 0.43 -1.0 46,375 + HUW76_00230 0.43 +0.2 46,375 + HUW76_00230 0.43 +0.7 46,399 + HUW76_00230 0.44 -0.7 46,468 + HUW76_00230 0.48 -0.1 46,475 + HUW76_00230 0.49 +0.6 46,537 + HUW76_00230 0.52 -0.2 46,541 + HUW76_00230 0.53 +0.8 46,544 + HUW76_00230 0.53 -0.2 46,549 - HUW76_00230 0.53 -0.7 46,549 - HUW76_00230 0.53 -2.2 46,550 - HUW76_00230 0.53 +0.7 46,550 - HUW76_00230 0.53 +0.8 46,571 - HUW76_00230 0.54 +2.2 46,636 + HUW76_00230 0.58 +0.5 46,643 - HUW76_00230 0.58 -0.5 46,643 - HUW76_00230 0.58 +0.9 46,644 - HUW76_00230 0.59 -1.5 46,644 - HUW76_00230 0.59 +1.0 46,644 - HUW76_00230 0.59 +0.4 46,644 - HUW76_00230 0.59 +1.1 46,663 + HUW76_00230 0.60 +0.1 46,712 - HUW76_00230 0.62 +1.3 46,712 - HUW76_00230 0.62 -0.5 46,743 + HUW76_00230 0.64 +0.2 46,744 - HUW76_00230 0.64 +1.5 46,744 - HUW76_00230 0.64 +0.3 46,749 - HUW76_00230 0.65 -0.9 46,763 + HUW76_00230 0.65 +1.1 46,779 + HUW76_00230 0.66 +0.8 46,779 + HUW76_00230 0.66 -0.6 46,792 + HUW76_00230 0.67 -1.3 46,792 + HUW76_00230 0.67 +0.3 46,825 + HUW76_00230 0.69 +0.8 46,825 + HUW76_00230 0.69 +0.8 46,862 + HUW76_00230 0.71 +0.1 46,943 - HUW76_00230 0.76 -2.4 46,943 - HUW76_00230 0.76 -1.7 47,052 + HUW76_00230 0.82 -0.9 47,052 + HUW76_00230 0.82 +0.6 47,145 + HUW76_00230 0.88 -0.9 47,145 + HUW76_00230 0.88 -0.9 47,174 - HUW76_00230 0.89 +1.4 47,174 - HUW76_00230 0.89 +0.7 47,182 + HUW76_00230 0.90 +0.8 47,182 + HUW76_00230 0.90 -3.3 47,184 - HUW76_00230 0.90 +0.7 47,264 + +0.2 47,264 + +0.2 47,264 + +1.0 47,264 + -0.4 47,599 - -0.2 47,632 - +0.0 47,632 - +0.7 47,641 + +0.6 47,641 + +0.5 47,649 - +0.9 47,729 + -3.1 47,729 + -2.3 47,729 + -1.8 47,811 + -0.8 47,811 + -1.2 47,919 + HUW76_00235 0.25 -0.2 47,919 + HUW76_00235 0.25 -2.3 47,939 + HUW76_00235 0.30 -0.3 47,945 + HUW76_00235 0.32 -0.3 48,134 + HUW76_00235 0.84 -1.6 48,134 + HUW76_00235 0.84 -1.2 48,151 + HUW76_00235 0.89 -1.2 48,151 + HUW76_00235 0.89 +0.2 48,159 + +1.4 48,240 + -1.9 48,243 + +0.4 48,243 + -1.0 48,243 + -1.7 48,254 + -3.4 48,276 + -1.1
Or see this region's nucleotide sequence