Strain Fitness in Escherichia coli ECRC98 around JDDGAC_03210

Experiment: EV146

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_03190 and JDDGAC_03195 overlap by 4 nucleotidesJDDGAC_03195 and JDDGAC_03200 overlap by 4 nucleotidesJDDGAC_03200 and JDDGAC_03205 are separated by 10 nucleotidesJDDGAC_03205 and JDDGAC_03210 overlap by 23 nucleotidesJDDGAC_03210 and JDDGAC_03215 are separated by 50 nucleotidesJDDGAC_03215 and JDDGAC_03220 are separated by 33 nucleotidesJDDGAC_03220 and JDDGAC_03225 overlap by 8 nucleotidesJDDGAC_03225 and JDDGAC_03230 overlap by 4 nucleotides JDDGAC_03190: JDDGAC_03190 - DUF977 domain-containing protein, at 541,942 to 542,334 _03190 JDDGAC_03195: JDDGAC_03195 - DUF4406 domain-containing protein, at 542,331 to 542,627 _03195 JDDGAC_03200: JDDGAC_03200 - hypothetical protein, at 542,624 to 542,875 _03200 JDDGAC_03205: JDDGAC_03205 - Ead/Ea22-like family protein, at 542,886 to 542,999 _03205 JDDGAC_03210: JDDGAC_03210 - hypothetical protein, at 542,977 to 543,333 _03210 JDDGAC_03215: JDDGAC_03215 - hypothetical protein, at 543,384 to 543,596 _03215 JDDGAC_03220: JDDGAC_03220 - hypothetical protein, at 543,630 to 543,812 _03220 JDDGAC_03225: JDDGAC_03225 - hypothetical protein, at 543,805 to 543,981 _03225 JDDGAC_03230: JDDGAC_03230 - Ead/Ea22-like protein, at 543,978 to 544,697 _03230 Position (kb) 542 543 544Strain fitness (log2 ratio) -2 -1 0 1 2 3at 542.044 kb on - strand, within JDDGAC_03190at 542.149 kb on + strand, within JDDGAC_03190at 542.230 kb on + strand, within JDDGAC_03190at 542.230 kb on + strand, within JDDGAC_03190at 542.302 kb on + strandat 542.432 kb on + strand, within JDDGAC_03195at 542.432 kb on + strand, within JDDGAC_03195at 542.481 kb on + strand, within JDDGAC_03195at 542.489 kb on + strand, within JDDGAC_03195at 542.489 kb on + strand, within JDDGAC_03195at 542.489 kb on + strand, within JDDGAC_03195at 542.490 kb on - strand, within JDDGAC_03195at 542.527 kb on - strand, within JDDGAC_03195at 542.785 kb on + strand, within JDDGAC_03200at 542.795 kb on - strand, within JDDGAC_03200at 543.224 kb on + strand, within JDDGAC_03210at 544.052 kb on + strand, within JDDGAC_03230at 544.052 kb on + strand, within JDDGAC_03230at 544.052 kb on + strand, within JDDGAC_03230at 544.194 kb on - strand, within JDDGAC_03230at 544.258 kb on - strand, within JDDGAC_03230

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Per-strain Table

Position Strand Gene LocusTag Fraction EV146
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542,044 - JDDGAC_03190 0.26 +0.3
542,149 + JDDGAC_03190 0.53 -0.0
542,230 + JDDGAC_03190 0.73 +0.1
542,230 + JDDGAC_03190 0.73 +0.3
542,302 + -0.4
542,432 + JDDGAC_03195 0.34 -0.1
542,432 + JDDGAC_03195 0.34 +0.8
542,481 + JDDGAC_03195 0.51 -1.2
542,489 + JDDGAC_03195 0.53 +1.4
542,489 + JDDGAC_03195 0.53 -0.2
542,489 + JDDGAC_03195 0.53 -0.8
542,490 - JDDGAC_03195 0.54 +0.1
542,527 - JDDGAC_03195 0.66 +3.6
542,785 + JDDGAC_03200 0.64 +0.7
542,795 - JDDGAC_03200 0.68 -0.7
543,224 + JDDGAC_03210 0.69 -2.2
544,052 + JDDGAC_03230 0.10 +0.3
544,052 + JDDGAC_03230 0.10 -0.5
544,052 + JDDGAC_03230 0.10 +2.1
544,194 - JDDGAC_03230 0.30 +0.2
544,258 - JDDGAC_03230 0.39 +1.5

Or see this region's nucleotide sequence