Strain Fitness in Escherichia coli ECRC98 around JDDGAC_08135

Experiment: EV146

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcadC1 and JDDGAC_08135 are separated by 4 nucleotidesJDDGAC_08135 and eAL are separated by 101 nucleotides JDDGAC_08130: cadC1 - transcriptional regulator, at 1,416,448 to 1,417,260 cadC1 JDDGAC_08135: JDDGAC_08135 - FidL, at 1,417,265 to 1,417,756 _08135 JDDGAC_08140: eAL - EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant), at 1,417,858 to 1,419,468 eAL Position (kb) 1417 1418Strain fitness (log2 ratio) -1 0 1 2at 1416.370 kb on + strandat 1416.432 kb on + strandat 1417.088 kb on + strand, within cadC1at 1417.707 kb on - strandat 1417.710 kb on + strandat 1418.087 kb on - strand, within eAL

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Per-strain Table

Position Strand Gene LocusTag Fraction EV146
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1,416,370 + -0.7
1,416,432 + +1.0
1,417,088 + cadC1 JDDGAC_08130 0.79 -0.2
1,417,707 - -0.5
1,417,710 + +2.7
1,418,087 - eAL JDDGAC_08140 0.14 -0.7

Or see this region's nucleotide sequence