Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS07150

Experiment: R2A_PIPES with Nickel (II) chloride 848 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS07145 and LRK53_RS07150 are separated by 123 nucleotidesLRK53_RS07150 and LRK53_RS07155 overlap by 4 nucleotidesLRK53_RS07155 and LRK53_RS07160 overlap by 8 nucleotides LRK53_RS07145: LRK53_RS07145 - thioredoxin, at 1,609,239 to 1,610,105 _RS07145 LRK53_RS07150: LRK53_RS07150 - paraquat-inducible protein A, at 1,610,229 to 1,610,846 _RS07150 LRK53_RS07155: LRK53_RS07155 - paraquat-inducible protein A, at 1,610,843 to 1,611,496 _RS07155 LRK53_RS07160: LRK53_RS07160 - MlaD family protein, at 1,611,489 to 1,613,189 _RS07160 Position (kb) 1610 1611Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1609.936 kb on + strand, within LRK53_RS07145at 1609.936 kb on + strand, within LRK53_RS07145at 1609.936 kb on + strand, within LRK53_RS07145at 1609.936 kb on + strand, within LRK53_RS07145at 1609.936 kb on + strand, within LRK53_RS07145at 1609.936 kb on + strand, within LRK53_RS07145at 1609.936 kb on + strand, within LRK53_RS07145at 1609.937 kb on - strand, within LRK53_RS07145at 1609.937 kb on - strand, within LRK53_RS07145at 1609.937 kb on - strand, within LRK53_RS07145at 1609.937 kb on - strand, within LRK53_RS07145at 1610.157 kb on + strandat 1610.157 kb on + strandat 1610.157 kb on + strandat 1610.157 kb on + strandat 1610.157 kb on + strandat 1610.157 kb on + strandat 1610.157 kb on + strandat 1610.157 kb on + strandat 1610.157 kb on + strandat 1610.157 kb on + strandat 1610.158 kb on - strandat 1610.158 kb on - strandat 1610.158 kb on - strandat 1610.158 kb on - strandat 1610.158 kb on - strandat 1610.158 kb on - strandat 1610.158 kb on - strandat 1610.158 kb on - strandat 1610.158 kb on - strandat 1610.158 kb on - strandat 1610.158 kb on - strandat 1610.178 kb on + strandat 1610.178 kb on + strandat 1610.178 kb on + strandat 1610.178 kb on + strandat 1610.179 kb on - strandat 1610.179 kb on - strandat 1610.179 kb on - strandat 1610.179 kb on - strandat 1610.283 kb on + strandat 1610.284 kb on - strandat 1610.284 kb on - strandat 1610.652 kb on + strand, within LRK53_RS07150at 1610.652 kb on + strand, within LRK53_RS07150at 1610.652 kb on + strand, within LRK53_RS07150at 1610.652 kb on + strand, within LRK53_RS07150at 1610.652 kb on + strand, within LRK53_RS07150at 1610.652 kb on + strand, within LRK53_RS07150at 1610.652 kb on + strand, within LRK53_RS07150at 1610.653 kb on - strand, within LRK53_RS07150at 1610.653 kb on - strand, within LRK53_RS07150at 1610.724 kb on + strand, within LRK53_RS07150at 1610.724 kb on + strand, within LRK53_RS07150at 1610.754 kb on + strand, within LRK53_RS07150at 1610.754 kb on + strand, within LRK53_RS07150at 1610.754 kb on + strand, within LRK53_RS07150at 1610.754 kb on + strand, within LRK53_RS07150at 1610.754 kb on + strand, within LRK53_RS07150at 1610.754 kb on + strand, within LRK53_RS07150at 1610.754 kb on + strand, within LRK53_RS07150at 1610.755 kb on - strand, within LRK53_RS07150at 1610.755 kb on - strand, within LRK53_RS07150at 1610.755 kb on - strand, within LRK53_RS07150at 1610.755 kb on - strand, within LRK53_RS07150at 1610.755 kb on - strand, within LRK53_RS07150at 1610.755 kb on - strand, within LRK53_RS07150at 1610.755 kb on - strand, within LRK53_RS07150at 1610.755 kb on - strand, within LRK53_RS07150at 1610.761 kb on - strand, within LRK53_RS07150at 1610.800 kb on + strandat 1610.983 kb on + strand, within LRK53_RS07155at 1611.011 kb on + strand, within LRK53_RS07155at 1611.011 kb on + strand, within LRK53_RS07155at 1611.011 kb on + strand, within LRK53_RS07155at 1611.012 kb on - strand, within LRK53_RS07155at 1611.012 kb on - strand, within LRK53_RS07155at 1611.012 kb on - strand, within LRK53_RS07155at 1611.012 kb on - strand, within LRK53_RS07155at 1611.012 kb on - strand, within LRK53_RS07155at 1611.012 kb on - strand, within LRK53_RS07155at 1611.012 kb on - strand, within LRK53_RS07155at 1611.053 kb on + strand, within LRK53_RS07155at 1611.053 kb on + strand, within LRK53_RS07155at 1611.053 kb on + strand, within LRK53_RS07155at 1611.053 kb on + strand, within LRK53_RS07155at 1611.053 kb on + strand, within LRK53_RS07155at 1611.053 kb on + strand, within LRK53_RS07155at 1611.053 kb on + strand, within LRK53_RS07155at 1611.053 kb on + strand, within LRK53_RS07155at 1611.053 kb on + strand, within LRK53_RS07155at 1611.053 kb on + strand, within LRK53_RS07155at 1611.053 kb on + strand, within LRK53_RS07155at 1611.053 kb on + strand, within LRK53_RS07155at 1611.053 kb on + strand, within LRK53_RS07155at 1611.053 kb on + strand, within LRK53_RS07155at 1611.053 kb on + strand, within LRK53_RS07155at 1611.053 kb on + strand, within LRK53_RS07155at 1611.053 kb on + strand, within LRK53_RS07155at 1611.053 kb on + strand, within LRK53_RS07155at 1611.053 kb on + strand, within LRK53_RS07155at 1611.053 kb on + strand, within LRK53_RS07155at 1611.053 kb on + strand, within LRK53_RS07155at 1611.053 kb on + strand, within LRK53_RS07155at 1611.053 kb on + strand, within LRK53_RS07155at 1611.053 kb on + strand, within LRK53_RS07155at 1611.053 kb on + strand, within LRK53_RS07155at 1611.053 kb on + strand, within LRK53_RS07155at 1611.053 kb on + strand, within LRK53_RS07155at 1611.053 kb on + strand, within LRK53_RS07155at 1611.053 kb on + strand, within LRK53_RS07155at 1611.053 kb on + strand, within LRK53_RS07155at 1611.053 kb on + strand, within LRK53_RS07155at 1611.053 kb on + strand, within LRK53_RS07155at 1611.053 kb on + strand, within LRK53_RS07155at 1611.053 kb on + strand, within LRK53_RS07155at 1611.053 kb on + strand, within LRK53_RS07155at 1611.053 kb on + strand, within LRK53_RS07155at 1611.053 kb on + strand, within LRK53_RS07155at 1611.054 kb on - strand, within LRK53_RS07155at 1611.054 kb on - strand, within LRK53_RS07155at 1611.054 kb on - strand, within LRK53_RS07155at 1611.054 kb on - strand, within LRK53_RS07155at 1611.054 kb on - strand, within LRK53_RS07155at 1611.054 kb on - strand, within LRK53_RS07155at 1611.054 kb on - strand, within LRK53_RS07155at 1611.054 kb on - strand, within LRK53_RS07155at 1611.054 kb on - strand, within LRK53_RS07155at 1611.054 kb on - strand, within LRK53_RS07155at 1611.054 kb on - strand, within LRK53_RS07155at 1611.054 kb on - strand, within LRK53_RS07155at 1611.054 kb on - strand, within LRK53_RS07155at 1611.054 kb on - strand, within LRK53_RS07155at 1611.054 kb on - strand, within LRK53_RS07155at 1611.054 kb on - strand, within LRK53_RS07155at 1611.054 kb on - strand, within LRK53_RS07155at 1611.054 kb on - strand, within LRK53_RS07155at 1611.054 kb on - strand, within LRK53_RS07155at 1611.054 kb on - strand, within LRK53_RS07155at 1611.054 kb on - strand, within LRK53_RS07155at 1611.054 kb on - strand, within LRK53_RS07155at 1611.054 kb on - strand, within LRK53_RS07155at 1611.054 kb on - strand, within LRK53_RS07155at 1611.054 kb on - strand, within LRK53_RS07155at 1611.054 kb on - strand, within LRK53_RS07155at 1611.054 kb on - strand, within LRK53_RS07155at 1611.054 kb on - strand, within LRK53_RS07155at 1611.054 kb on - strand, within LRK53_RS07155at 1611.054 kb on - strand, within LRK53_RS07155at 1611.054 kb on - strand, within LRK53_RS07155at 1611.054 kb on - strand, within LRK53_RS07155at 1611.054 kb on - strand, within LRK53_RS07155at 1611.054 kb on - strand, within LRK53_RS07155at 1611.054 kb on - strand, within LRK53_RS07155at 1611.054 kb on - strand, within LRK53_RS07155at 1611.312 kb on - strand, within LRK53_RS07155at 1611.417 kb on + strand, within LRK53_RS07155at 1611.485 kb on - strandat 1611.717 kb on + strand, within LRK53_RS07160at 1611.717 kb on + strand, within LRK53_RS07160at 1611.717 kb on + strand, within LRK53_RS07160at 1611.717 kb on + strand, within LRK53_RS07160at 1611.717 kb on + strand, within LRK53_RS07160at 1611.717 kb on + strand, within LRK53_RS07160at 1611.717 kb on + strand, within LRK53_RS07160at 1611.717 kb on + strand, within LRK53_RS07160at 1611.717 kb on + strand, within LRK53_RS07160at 1611.717 kb on + strand, within LRK53_RS07160at 1611.718 kb on - strand, within LRK53_RS07160at 1611.718 kb on - strand, within LRK53_RS07160at 1611.718 kb on - strand, within LRK53_RS07160at 1611.718 kb on - strand, within LRK53_RS07160at 1611.718 kb on - strand, within LRK53_RS07160

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Nickel (II) chloride 848 uM
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1,609,936 + LRK53_RS07145 0.80 -0.7
1,609,936 + LRK53_RS07145 0.80 +0.3
1,609,936 + LRK53_RS07145 0.80 -1.7
1,609,936 + LRK53_RS07145 0.80 -0.3
1,609,936 + LRK53_RS07145 0.80 -3.1
1,609,936 + LRK53_RS07145 0.80 +0.9
1,609,936 + LRK53_RS07145 0.80 +0.3
1,609,937 - LRK53_RS07145 0.81 -0.7
1,609,937 - LRK53_RS07145 0.81 -0.1
1,609,937 - LRK53_RS07145 0.81 -0.7
1,609,937 - LRK53_RS07145 0.81 -0.7
1,610,157 + -0.7
1,610,157 + -0.1
1,610,157 + +0.9
1,610,157 + -1.1
1,610,157 + +1.3
1,610,157 + -1.0
1,610,157 + -1.2
1,610,157 + +0.3
1,610,157 + -1.1
1,610,157 + -1.4
1,610,158 - -1.1
1,610,158 - +0.3
1,610,158 - -0.7
1,610,158 - +0.3
1,610,158 - +0.9
1,610,158 - -2.3
1,610,158 - -1.7
1,610,158 - -0.1
1,610,158 - -1.1
1,610,158 - -0.9
1,610,158 - -1.7
1,610,178 + +0.3
1,610,178 + -0.1
1,610,178 + +2.5
1,610,178 + +1.3
1,610,179 - -1.4
1,610,179 - -2.6
1,610,179 - -0.1
1,610,179 - -1.6
1,610,283 + +0.4
1,610,284 - -0.8
1,610,284 - +2.5
1,610,652 + LRK53_RS07150 0.68 -2.6
1,610,652 + LRK53_RS07150 0.68 -1.7
1,610,652 + LRK53_RS07150 0.68 -0.7
1,610,652 + LRK53_RS07150 0.68 -2.1
1,610,652 + LRK53_RS07150 0.68 -0.1
1,610,652 + LRK53_RS07150 0.68 -1.4
1,610,652 + LRK53_RS07150 0.68 -0.7
1,610,653 - LRK53_RS07150 0.69 -0.1
1,610,653 - LRK53_RS07150 0.69 -1.4
1,610,724 + LRK53_RS07150 0.80 -1.1
1,610,724 + LRK53_RS07150 0.80 -0.1
1,610,754 + LRK53_RS07150 0.85 -1.1
1,610,754 + LRK53_RS07150 0.85 -2.2
1,610,754 + LRK53_RS07150 0.85 -0.5
1,610,754 + LRK53_RS07150 0.85 -1.0
1,610,754 + LRK53_RS07150 0.85 -0.4
1,610,754 + LRK53_RS07150 0.85 -0.7
1,610,754 + LRK53_RS07150 0.85 -1.1
1,610,755 - LRK53_RS07150 0.85 +0.6
1,610,755 - LRK53_RS07150 0.85 -1.3
1,610,755 - LRK53_RS07150 0.85 +0.1
1,610,755 - LRK53_RS07150 0.85 -1.7
1,610,755 - LRK53_RS07150 0.85 +0.2
1,610,755 - LRK53_RS07150 0.85 -1.1
1,610,755 - LRK53_RS07150 0.85 -2.4
1,610,755 - LRK53_RS07150 0.85 -2.6
1,610,761 - LRK53_RS07150 0.86 -1.4
1,610,800 + -1.7
1,610,983 + LRK53_RS07155 0.21 -0.1
1,611,011 + LRK53_RS07155 0.26 +0.9
1,611,011 + LRK53_RS07155 0.26 -0.4
1,611,011 + LRK53_RS07155 0.26 -1.7
1,611,012 - LRK53_RS07155 0.26 -0.7
1,611,012 - LRK53_RS07155 0.26 -1.3
1,611,012 - LRK53_RS07155 0.26 -1.9
1,611,012 - LRK53_RS07155 0.26 -0.6
1,611,012 - LRK53_RS07155 0.26 -0.7
1,611,012 - LRK53_RS07155 0.26 -0.4
1,611,012 - LRK53_RS07155 0.26 -1.9
1,611,053 + LRK53_RS07155 0.32 -1.0
1,611,053 + LRK53_RS07155 0.32 -0.4
1,611,053 + LRK53_RS07155 0.32 -1.3
1,611,053 + LRK53_RS07155 0.32 -2.8
1,611,053 + LRK53_RS07155 0.32 -0.5
1,611,053 + LRK53_RS07155 0.32 -1.4
1,611,053 + LRK53_RS07155 0.32 +0.9
1,611,053 + LRK53_RS07155 0.32 -0.1
1,611,053 + LRK53_RS07155 0.32 -0.3
1,611,053 + LRK53_RS07155 0.32 -0.5
1,611,053 + LRK53_RS07155 0.32 -1.6
1,611,053 + LRK53_RS07155 0.32 -1.0
1,611,053 + LRK53_RS07155 0.32 -0.9
1,611,053 + LRK53_RS07155 0.32 -1.1
1,611,053 + LRK53_RS07155 0.32 +0.9
1,611,053 + LRK53_RS07155 0.32 +0.2
1,611,053 + LRK53_RS07155 0.32 -1.4
1,611,053 + LRK53_RS07155 0.32 -0.1
1,611,053 + LRK53_RS07155 0.32 -1.8
1,611,053 + LRK53_RS07155 0.32 -3.5
1,611,053 + LRK53_RS07155 0.32 -1.1
1,611,053 + LRK53_RS07155 0.32 -0.1
1,611,053 + LRK53_RS07155 0.32 -1.1
1,611,053 + LRK53_RS07155 0.32 -0.7
1,611,053 + LRK53_RS07155 0.32 +1.8
1,611,053 + LRK53_RS07155 0.32 +1.9
1,611,053 + LRK53_RS07155 0.32 +0.3
1,611,053 + LRK53_RS07155 0.32 -0.1
1,611,053 + LRK53_RS07155 0.32 -0.6
1,611,053 + LRK53_RS07155 0.32 -1.7
1,611,053 + LRK53_RS07155 0.32 -1.1
1,611,053 + LRK53_RS07155 0.32 +0.5
1,611,053 + LRK53_RS07155 0.32 +0.9
1,611,053 + LRK53_RS07155 0.32 +2.5
1,611,053 + LRK53_RS07155 0.32 -0.7
1,611,053 + LRK53_RS07155 0.32 +0.2
1,611,053 + LRK53_RS07155 0.32 -1.9
1,611,054 - LRK53_RS07155 0.32 -1.6
1,611,054 - LRK53_RS07155 0.32 +0.9
1,611,054 - LRK53_RS07155 0.32 -1.7
1,611,054 - LRK53_RS07155 0.32 -0.7
1,611,054 - LRK53_RS07155 0.32 -0.1
1,611,054 - LRK53_RS07155 0.32 -1.5
1,611,054 - LRK53_RS07155 0.32 -0.7
1,611,054 - LRK53_RS07155 0.32 -1.5
1,611,054 - LRK53_RS07155 0.32 -1.4
1,611,054 - LRK53_RS07155 0.32 -0.1
1,611,054 - LRK53_RS07155 0.32 -1.8
1,611,054 - LRK53_RS07155 0.32 -0.7
1,611,054 - LRK53_RS07155 0.32 -0.7
1,611,054 - LRK53_RS07155 0.32 -1.2
1,611,054 - LRK53_RS07155 0.32 -1.6
1,611,054 - LRK53_RS07155 0.32 +0.9
1,611,054 - LRK53_RS07155 0.32 +1.9
1,611,054 - LRK53_RS07155 0.32 +0.5
1,611,054 - LRK53_RS07155 0.32 +1.5
1,611,054 - LRK53_RS07155 0.32 -1.4
1,611,054 - LRK53_RS07155 0.32 -0.1
1,611,054 - LRK53_RS07155 0.32 -0.8
1,611,054 - LRK53_RS07155 0.32 +0.9
1,611,054 - LRK53_RS07155 0.32 -1.4
1,611,054 - LRK53_RS07155 0.32 -1.1
1,611,054 - LRK53_RS07155 0.32 -0.9
1,611,054 - LRK53_RS07155 0.32 -0.1
1,611,054 - LRK53_RS07155 0.32 -1.4
1,611,054 - LRK53_RS07155 0.32 +0.6
1,611,054 - LRK53_RS07155 0.32 -2.6
1,611,054 - LRK53_RS07155 0.32 -1.3
1,611,054 - LRK53_RS07155 0.32 -0.1
1,611,054 - LRK53_RS07155 0.32 -1.1
1,611,054 - LRK53_RS07155 0.32 -1.9
1,611,054 - LRK53_RS07155 0.32 -0.7
1,611,054 - LRK53_RS07155 0.32 +0.2
1,611,312 - LRK53_RS07155 0.72 -0.8
1,611,417 + LRK53_RS07155 0.88 -0.1
1,611,485 - -0.7
1,611,717 + LRK53_RS07160 0.13 +0.9
1,611,717 + LRK53_RS07160 0.13 +0.9
1,611,717 + LRK53_RS07160 0.13 -1.3
1,611,717 + LRK53_RS07160 0.13 -0.9
1,611,717 + LRK53_RS07160 0.13 -1.1
1,611,717 + LRK53_RS07160 0.13 -1.0
1,611,717 + LRK53_RS07160 0.13 +0.9
1,611,717 + LRK53_RS07160 0.13 +0.9
1,611,717 + LRK53_RS07160 0.13 -0.8
1,611,717 + LRK53_RS07160 0.13 -0.8
1,611,718 - LRK53_RS07160 0.13 +0.5
1,611,718 - LRK53_RS07160 0.13 -0.2
1,611,718 - LRK53_RS07160 0.13 -0.1
1,611,718 - LRK53_RS07160 0.13 -0.8
1,611,718 - LRK53_RS07160 0.13 -1.9

Or see this region's nucleotide sequence