Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS00600

Experiment: R2A_PIPES with Nickel (II) chloride 848 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS00590 and LRK53_RS00595 are separated by 3 nucleotidesLRK53_RS00595 and LRK53_RS00600 are separated by 96 nucleotidesLRK53_RS00600 and LRK53_RS00605 are separated by 221 nucleotides LRK53_RS00590: LRK53_RS00590 - DUF488 domain-containing protein, at 134,779 to 135,327 _RS00590 LRK53_RS00595: LRK53_RS00595 - DUF2945 domain-containing protein, at 135,331 to 135,543 _RS00595 LRK53_RS00600: LRK53_RS00600 - hypothetical protein, at 135,640 to 135,888 _RS00600 LRK53_RS00605: LRK53_RS00605 - cytochrome P450, at 136,110 to 137,261 _RS00605 Position (kb) 135 136Strain fitness (log2 ratio) -2 -1 0 1 2at 134.780 kb on + strandat 134.780 kb on + strandat 134.781 kb on - strandat 134.807 kb on + strandat 134.807 kb on + strandat 134.808 kb on - strandat 134.808 kb on - strandat 134.808 kb on - strandat 134.846 kb on + strand, within LRK53_RS00590at 134.846 kb on + strand, within LRK53_RS00590at 134.846 kb on + strand, within LRK53_RS00590at 134.846 kb on + strand, within LRK53_RS00590at 134.846 kb on + strand, within LRK53_RS00590at 134.847 kb on - strand, within LRK53_RS00590at 134.847 kb on - strand, within LRK53_RS00590at 135.038 kb on + strand, within LRK53_RS00590at 135.039 kb on - strand, within LRK53_RS00590at 135.078 kb on + strand, within LRK53_RS00590at 135.135 kb on - strand, within LRK53_RS00590at 135.135 kb on - strand, within LRK53_RS00590at 135.401 kb on + strand, within LRK53_RS00595at 135.401 kb on + strand, within LRK53_RS00595at 135.401 kb on + strand, within LRK53_RS00595at 135.402 kb on - strand, within LRK53_RS00595at 135.402 kb on - strand, within LRK53_RS00595at 135.402 kb on - strand, within LRK53_RS00595at 135.443 kb on + strand, within LRK53_RS00595at 135.443 kb on + strand, within LRK53_RS00595at 135.443 kb on + strand, within LRK53_RS00595at 135.443 kb on + strand, within LRK53_RS00595at 135.443 kb on + strand, within LRK53_RS00595at 135.444 kb on - strand, within LRK53_RS00595at 135.444 kb on - strand, within LRK53_RS00595at 135.444 kb on - strand, within LRK53_RS00595at 135.444 kb on - strand, within LRK53_RS00595at 135.444 kb on - strand, within LRK53_RS00595at 135.444 kb on - strand, within LRK53_RS00595at 135.444 kb on - strand, within LRK53_RS00595at 135.450 kb on + strand, within LRK53_RS00595at 135.488 kb on + strand, within LRK53_RS00595at 135.488 kb on + strand, within LRK53_RS00595at 135.488 kb on + strand, within LRK53_RS00595at 135.489 kb on - strand, within LRK53_RS00595at 135.489 kb on - strand, within LRK53_RS00595at 135.565 kb on - strandat 135.642 kb on - strandat 135.712 kb on + strand, within LRK53_RS00600at 135.712 kb on + strand, within LRK53_RS00600at 135.712 kb on + strand, within LRK53_RS00600at 135.712 kb on + strand, within LRK53_RS00600at 135.712 kb on + strand, within LRK53_RS00600at 135.712 kb on + strand, within LRK53_RS00600at 135.712 kb on + strand, within LRK53_RS00600at 135.712 kb on + strand, within LRK53_RS00600at 135.712 kb on + strand, within LRK53_RS00600at 135.712 kb on + strand, within LRK53_RS00600at 135.712 kb on + strand, within LRK53_RS00600at 135.713 kb on - strand, within LRK53_RS00600at 135.713 kb on - strand, within LRK53_RS00600at 135.713 kb on - strand, within LRK53_RS00600at 135.713 kb on - strand, within LRK53_RS00600at 135.713 kb on - strand, within LRK53_RS00600at 135.713 kb on - strand, within LRK53_RS00600at 135.713 kb on - strand, within LRK53_RS00600at 135.713 kb on - strand, within LRK53_RS00600at 135.713 kb on - strand, within LRK53_RS00600at 135.713 kb on - strand, within LRK53_RS00600at 135.713 kb on - strand, within LRK53_RS00600at 135.713 kb on - strand, within LRK53_RS00600at 135.713 kb on - strand, within LRK53_RS00600at 135.713 kb on - strand, within LRK53_RS00600at 135.746 kb on + strand, within LRK53_RS00600at 135.746 kb on + strand, within LRK53_RS00600at 135.746 kb on + strand, within LRK53_RS00600at 135.746 kb on + strand, within LRK53_RS00600at 135.746 kb on + strand, within LRK53_RS00600at 135.746 kb on + strand, within LRK53_RS00600at 135.746 kb on + strand, within LRK53_RS00600at 135.747 kb on - strand, within LRK53_RS00600at 135.747 kb on - strand, within LRK53_RS00600at 135.747 kb on - strand, within LRK53_RS00600at 135.747 kb on - strand, within LRK53_RS00600at 135.830 kb on + strand, within LRK53_RS00600at 135.831 kb on - strand, within LRK53_RS00600at 135.831 kb on - strand, within LRK53_RS00600at 135.959 kb on + strandat 135.959 kb on + strandat 135.959 kb on + strandat 135.959 kb on + strandat 135.959 kb on + strandat 135.959 kb on + strandat 135.959 kb on + strandat 135.960 kb on - strandat 135.960 kb on - strandat 135.960 kb on - strandat 135.960 kb on - strandat 135.960 kb on - strandat 135.960 kb on - strandat 135.960 kb on - strandat 135.960 kb on - strandat 135.960 kb on - strandat 136.053 kb on - strandat 136.053 kb on - strandat 136.105 kb on + strandat 136.164 kb on + strandat 136.164 kb on + strandat 136.164 kb on + strandat 136.165 kb on - strandat 136.165 kb on - strandat 136.165 kb on - strandat 136.301 kb on + strand, within LRK53_RS00605at 136.301 kb on + strand, within LRK53_RS00605at 136.301 kb on + strand, within LRK53_RS00605at 136.301 kb on + strand, within LRK53_RS00605at 136.301 kb on + strand, within LRK53_RS00605at 136.301 kb on + strand, within LRK53_RS00605at 136.302 kb on - strand, within LRK53_RS00605at 136.302 kb on - strand, within LRK53_RS00605at 136.302 kb on - strand, within LRK53_RS00605at 136.302 kb on - strand, within LRK53_RS00605at 136.302 kb on - strand, within LRK53_RS00605at 136.302 kb on - strand, within LRK53_RS00605at 136.302 kb on - strand, within LRK53_RS00605at 136.302 kb on - strand, within LRK53_RS00605at 136.339 kb on - strand, within LRK53_RS00605at 136.636 kb on + strand, within LRK53_RS00605at 136.636 kb on + strand, within LRK53_RS00605at 136.636 kb on + strand, within LRK53_RS00605at 136.637 kb on - strand, within LRK53_RS00605at 136.637 kb on - strand, within LRK53_RS00605at 136.637 kb on - strand, within LRK53_RS00605at 136.637 kb on - strand, within LRK53_RS00605at 136.637 kb on - strand, within LRK53_RS00605at 136.637 kb on - strand, within LRK53_RS00605at 136.637 kb on - strand, within LRK53_RS00605

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Nickel (II) chloride 848 uM
remove
134,780 + -1.5
134,780 + +0.1
134,781 - -2.6
134,807 + +0.1
134,807 + -1.7
134,808 - -0.4
134,808 - -1.1
134,808 - +1.1
134,846 + LRK53_RS00590 0.12 -0.3
134,846 + LRK53_RS00590 0.12 +1.1
134,846 + LRK53_RS00590 0.12 -2.2
134,846 + LRK53_RS00590 0.12 -0.9
134,846 + LRK53_RS00590 0.12 -1.4
134,847 - LRK53_RS00590 0.12 -0.3
134,847 - LRK53_RS00590 0.12 +0.3
135,038 + LRK53_RS00590 0.47 +0.7
135,039 - LRK53_RS00590 0.47 -0.9
135,078 + LRK53_RS00590 0.54 -1.7
135,135 - LRK53_RS00590 0.65 -0.9
135,135 - LRK53_RS00590 0.65 -0.5
135,401 + LRK53_RS00595 0.33 -0.4
135,401 + LRK53_RS00595 0.33 -1.5
135,401 + LRK53_RS00595 0.33 -0.3
135,402 - LRK53_RS00595 0.33 +0.2
135,402 - LRK53_RS00595 0.33 -1.2
135,402 - LRK53_RS00595 0.33 -0.5
135,443 + LRK53_RS00595 0.53 +0.5
135,443 + LRK53_RS00595 0.53 +0.8
135,443 + LRK53_RS00595 0.53 +0.1
135,443 + LRK53_RS00595 0.53 -0.5
135,443 + LRK53_RS00595 0.53 +2.1
135,444 - LRK53_RS00595 0.53 -0.5
135,444 - LRK53_RS00595 0.53 +0.1
135,444 - LRK53_RS00595 0.53 -1.3
135,444 - LRK53_RS00595 0.53 -1.3
135,444 - LRK53_RS00595 0.53 -1.2
135,444 - LRK53_RS00595 0.53 +2.1
135,444 - LRK53_RS00595 0.53 -0.5
135,450 + LRK53_RS00595 0.56 -0.7
135,488 + LRK53_RS00595 0.74 +1.1
135,488 + LRK53_RS00595 0.74 +1.1
135,488 + LRK53_RS00595 0.74 +0.1
135,489 - LRK53_RS00595 0.74 +2.1
135,489 - LRK53_RS00595 0.74 -0.8
135,565 - -1.3
135,642 - -0.9
135,712 + LRK53_RS00600 0.29 -0.5
135,712 + LRK53_RS00600 0.29 -0.5
135,712 + LRK53_RS00600 0.29 -1.5
135,712 + LRK53_RS00600 0.29 -2.1
135,712 + LRK53_RS00600 0.29 -1.5
135,712 + LRK53_RS00600 0.29 -0.5
135,712 + LRK53_RS00600 0.29 +1.1
135,712 + LRK53_RS00600 0.29 -1.0
135,712 + LRK53_RS00600 0.29 -0.9
135,712 + LRK53_RS00600 0.29 +1.1
135,712 + LRK53_RS00600 0.29 -0.7
135,713 - LRK53_RS00600 0.29 -1.9
135,713 - LRK53_RS00600 0.29 -0.3
135,713 - LRK53_RS00600 0.29 -1.5
135,713 - LRK53_RS00600 0.29 +0.5
135,713 - LRK53_RS00600 0.29 -2.4
135,713 - LRK53_RS00600 0.29 -0.1
135,713 - LRK53_RS00600 0.29 -1.3
135,713 - LRK53_RS00600 0.29 -0.8
135,713 - LRK53_RS00600 0.29 -1.5
135,713 - LRK53_RS00600 0.29 -2.0
135,713 - LRK53_RS00600 0.29 +2.1
135,713 - LRK53_RS00600 0.29 +1.1
135,713 - LRK53_RS00600 0.29 +1.1
135,713 - LRK53_RS00600 0.29 +0.1
135,746 + LRK53_RS00600 0.43 -1.7
135,746 + LRK53_RS00600 0.43 +1.1
135,746 + LRK53_RS00600 0.43 -2.3
135,746 + LRK53_RS00600 0.43 -0.5
135,746 + LRK53_RS00600 0.43 +1.8
135,746 + LRK53_RS00600 0.43 +0.3
135,746 + LRK53_RS00600 0.43 -1.3
135,747 - LRK53_RS00600 0.43 -0.9
135,747 - LRK53_RS00600 0.43 -1.7
135,747 - LRK53_RS00600 0.43 -0.7
135,747 - LRK53_RS00600 0.43 -1.5
135,830 + LRK53_RS00600 0.76 -2.1
135,831 - LRK53_RS00600 0.77 -0.7
135,831 - LRK53_RS00600 0.77 +0.1
135,959 + -1.9
135,959 + -1.5
135,959 + -0.9
135,959 + -1.9
135,959 + -0.5
135,959 + +1.1
135,959 + -1.7
135,960 - -1.3
135,960 - -0.3
135,960 - -2.1
135,960 - -0.9
135,960 - -0.5
135,960 - +0.1
135,960 - +0.3
135,960 - -0.7
135,960 - -0.5
136,053 - -0.7
136,053 - -0.5
136,105 + +1.1
136,164 + -1.4
136,164 + -0.5
136,164 + +0.1
136,165 - +0.1
136,165 - -0.2
136,165 - +1.1
136,301 + LRK53_RS00605 0.17 -0.4
136,301 + LRK53_RS00605 0.17 -0.5
136,301 + LRK53_RS00605 0.17 +0.2
136,301 + LRK53_RS00605 0.17 -0.7
136,301 + LRK53_RS00605 0.17 -2.1
136,301 + LRK53_RS00605 0.17 -1.1
136,302 - LRK53_RS00605 0.17 -1.0
136,302 - LRK53_RS00605 0.17 -1.5
136,302 - LRK53_RS00605 0.17 +0.1
136,302 - LRK53_RS00605 0.17 +0.1
136,302 - LRK53_RS00605 0.17 -0.9
136,302 - LRK53_RS00605 0.17 -0.9
136,302 - LRK53_RS00605 0.17 -1.3
136,302 - LRK53_RS00605 0.17 -0.6
136,339 - LRK53_RS00605 0.20 -1.4
136,636 + LRK53_RS00605 0.46 -2.6
136,636 + LRK53_RS00605 0.46 -1.0
136,636 + LRK53_RS00605 0.46 -0.9
136,637 - LRK53_RS00605 0.46 +0.5
136,637 - LRK53_RS00605 0.46 -0.9
136,637 - LRK53_RS00605 0.46 -0.2
136,637 - LRK53_RS00605 0.46 -2.3
136,637 - LRK53_RS00605 0.46 -1.7
136,637 - LRK53_RS00605 0.46 -1.3
136,637 - LRK53_RS00605 0.46 -0.9

Or see this region's nucleotide sequence