Experiment: R2A_PIPES with Nickel (II) chloride 848 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00425 and LRK53_RS00430 are separated by 262 nucleotides LRK53_RS00430 and LRK53_RS00435 are separated by 117 nucleotides
LRK53_RS00425: LRK53_RS00425 - mercuric reductase, at 95,268 to 96,680
_RS00425
LRK53_RS00430: LRK53_RS00430 - conjugal transfer protein TraR, at 96,943 to 97,338
_RS00430
LRK53_RS00435: LRK53_RS00435 - S8 family serine peptidase, at 97,456 to 98,742
_RS00435
Position (kb) 96
97
98 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 96.124 kb on + strand, within LRK53_RS00425 at 96.124 kb on + strand, within LRK53_RS00425 at 96.124 kb on + strand, within LRK53_RS00425 at 96.124 kb on + strand, within LRK53_RS00425 at 96.124 kb on + strand, within LRK53_RS00425 at 96.124 kb on + strand, within LRK53_RS00425 at 96.124 kb on + strand, within LRK53_RS00425 at 96.125 kb on - strand, within LRK53_RS00425 at 96.125 kb on - strand, within LRK53_RS00425 at 96.125 kb on - strand, within LRK53_RS00425 at 96.125 kb on - strand, within LRK53_RS00425 at 96.125 kb on - strand, within LRK53_RS00425 at 96.125 kb on - strand, within LRK53_RS00425 at 96.125 kb on - strand, within LRK53_RS00425 at 96.125 kb on - strand, within LRK53_RS00425 at 96.216 kb on + strand, within LRK53_RS00425 at 96.253 kb on + strand, within LRK53_RS00425 at 96.254 kb on - strand, within LRK53_RS00425 at 96.254 kb on - strand, within LRK53_RS00425 at 96.367 kb on + strand, within LRK53_RS00425 at 96.367 kb on + strand, within LRK53_RS00425 at 96.368 kb on - strand, within LRK53_RS00425 at 96.368 kb on - strand, within LRK53_RS00425 at 96.619 kb on + strand at 96.619 kb on + strand at 96.619 kb on + strand at 96.619 kb on + strand at 96.619 kb on + strand at 96.619 kb on + strand at 96.619 kb on + strand at 96.619 kb on + strand at 96.619 kb on + strand at 96.620 kb on - strand at 96.620 kb on - strand at 96.620 kb on - strand at 96.620 kb on - strand at 96.620 kb on - strand at 96.620 kb on - strand at 96.620 kb on - strand at 96.658 kb on + strand at 96.658 kb on + strand at 96.659 kb on - strand at 96.659 kb on - strand at 96.659 kb on - strand at 96.659 kb on - strand at 96.700 kb on - strand at 96.732 kb on + strand at 96.732 kb on + strand at 96.746 kb on + strand at 96.747 kb on - strand at 96.751 kb on + strand at 96.751 kb on + strand at 96.751 kb on + strand at 96.751 kb on + strand at 96.752 kb on - strand at 96.752 kb on - strand at 96.752 kb on - strand at 96.752 kb on - strand at 96.752 kb on - strand at 96.891 kb on - strand at 96.945 kb on - strand at 97.058 kb on + strand, within LRK53_RS00430 at 97.058 kb on + strand, within LRK53_RS00430 at 97.058 kb on + strand, within LRK53_RS00430 at 97.059 kb on - strand, within LRK53_RS00430 at 97.380 kb on + strand at 97.380 kb on + strand at 97.380 kb on + strand at 97.380 kb on + strand at 97.380 kb on + strand at 97.381 kb on - strand at 97.381 kb on - strand at 97.381 kb on - strand at 97.381 kb on - strand at 97.381 kb on - strand at 97.381 kb on - strand at 97.381 kb on - strand at 97.413 kb on - strand at 97.546 kb on + strand at 97.547 kb on - strand at 97.997 kb on + strand, within LRK53_RS00435 at 97.997 kb on + strand, within LRK53_RS00435 at 97.997 kb on + strand, within LRK53_RS00435 at 97.997 kb on + strand, within LRK53_RS00435 at 97.997 kb on + strand, within LRK53_RS00435 at 97.997 kb on + strand, within LRK53_RS00435 at 97.997 kb on + strand, within LRK53_RS00435 at 97.998 kb on - strand, within LRK53_RS00435 at 97.998 kb on - strand, within LRK53_RS00435 at 97.998 kb on - strand, within LRK53_RS00435 at 98.276 kb on + strand, within LRK53_RS00435 at 98.276 kb on + strand, within LRK53_RS00435 at 98.276 kb on + strand, within LRK53_RS00435 at 98.277 kb on - strand, within LRK53_RS00435 at 98.277 kb on - strand, within LRK53_RS00435 at 98.288 kb on + strand, within LRK53_RS00435 at 98.288 kb on + strand, within LRK53_RS00435 at 98.288 kb on + strand, within LRK53_RS00435 at 98.288 kb on + strand, within LRK53_RS00435 at 98.288 kb on + strand, within LRK53_RS00435 at 98.288 kb on + strand, within LRK53_RS00435 at 98.288 kb on + strand, within LRK53_RS00435 at 98.289 kb on - strand, within LRK53_RS00435 at 98.289 kb on - strand, within LRK53_RS00435 at 98.318 kb on + strand, within LRK53_RS00435 at 98.327 kb on + strand, within LRK53_RS00435
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Nickel (II) chloride 848 uM remove 96,124 + LRK53_RS00425 0.61 -1.7 96,124 + LRK53_RS00425 0.61 +1.1 96,124 + LRK53_RS00425 0.61 -1.8 96,124 + LRK53_RS00425 0.61 -3.5 96,124 + LRK53_RS00425 0.61 -0.2 96,124 + LRK53_RS00425 0.61 -0.9 96,124 + LRK53_RS00425 0.61 +0.3 96,125 - LRK53_RS00425 0.61 -1.5 96,125 - LRK53_RS00425 0.61 -0.7 96,125 - LRK53_RS00425 0.61 -0.5 96,125 - LRK53_RS00425 0.61 -2.3 96,125 - LRK53_RS00425 0.61 +2.7 96,125 - LRK53_RS00425 0.61 +0.1 96,125 - LRK53_RS00425 0.61 +0.1 96,125 - LRK53_RS00425 0.61 -0.5 96,216 + LRK53_RS00425 0.67 -1.3 96,253 + LRK53_RS00425 0.70 -1.1 96,254 - LRK53_RS00425 0.70 -0.8 96,254 - LRK53_RS00425 0.70 +0.1 96,367 + LRK53_RS00425 0.78 -1.3 96,367 + LRK53_RS00425 0.78 -1.6 96,368 - LRK53_RS00425 0.78 +0.7 96,368 - LRK53_RS00425 0.78 +0.8 96,619 + -1.9 96,619 + -0.5 96,619 + -0.7 96,619 + -0.7 96,619 + -0.7 96,619 + -2.0 96,619 + -1.7 96,619 + +0.1 96,619 + -0.6 96,620 - +0.1 96,620 - -0.5 96,620 - +1.1 96,620 - -0.7 96,620 - -0.9 96,620 - +0.6 96,620 - -1.8 96,658 + -0.3 96,658 + +0.1 96,659 - -1.3 96,659 - -1.6 96,659 - -0.5 96,659 - -1.3 96,700 - +0.1 96,732 + -0.7 96,732 + -0.9 96,746 + -1.1 96,747 - -1.5 96,751 + +1.1 96,751 + -0.6 96,751 + -0.8 96,751 + -0.8 96,752 - -1.4 96,752 - -1.3 96,752 - -1.3 96,752 - -0.5 96,752 - -1.9 96,891 - -0.7 96,945 - -0.5 97,058 + LRK53_RS00430 0.29 -1.3 97,058 + LRK53_RS00430 0.29 -1.3 97,058 + LRK53_RS00430 0.29 -2.3 97,059 - LRK53_RS00430 0.29 -1.1 97,380 + +1.1 97,380 + -0.9 97,380 + -1.5 97,380 + -0.9 97,380 + -0.9 97,381 - +1.1 97,381 - -1.0 97,381 - -2.6 97,381 - +1.3 97,381 - -0.9 97,381 - -0.5 97,381 - +1.1 97,413 - -0.7 97,546 + -0.5 97,547 - -1.5 97,997 + LRK53_RS00435 0.42 -0.7 97,997 + LRK53_RS00435 0.42 -2.0 97,997 + LRK53_RS00435 0.42 -0.3 97,997 + LRK53_RS00435 0.42 -1.5 97,997 + LRK53_RS00435 0.42 -1.4 97,997 + LRK53_RS00435 0.42 -2.1 97,997 + LRK53_RS00435 0.42 -0.9 97,998 - LRK53_RS00435 0.42 -0.9 97,998 - LRK53_RS00435 0.42 +1.1 97,998 - LRK53_RS00435 0.42 -0.9 98,276 + LRK53_RS00435 0.64 -0.2 98,276 + LRK53_RS00435 0.64 -1.3 98,276 + LRK53_RS00435 0.64 +0.1 98,277 - LRK53_RS00435 0.64 -0.9 98,277 - LRK53_RS00435 0.64 -0.7 98,288 + LRK53_RS00435 0.65 -0.9 98,288 + LRK53_RS00435 0.65 -0.7 98,288 + LRK53_RS00435 0.65 -0.3 98,288 + LRK53_RS00435 0.65 -1.3 98,288 + LRK53_RS00435 0.65 -0.9 98,288 + LRK53_RS00435 0.65 -1.5 98,288 + LRK53_RS00435 0.65 +0.4 98,289 - LRK53_RS00435 0.65 -0.5 98,289 - LRK53_RS00435 0.65 +1.8 98,318 + LRK53_RS00435 0.67 -1.3 98,327 + LRK53_RS00435 0.68 -1.3
Or see this region's nucleotide sequence