Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_03690

Experiment: G1M3_D7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_03680 and HUW76_03685 are separated by 2 nucleotidesHUW76_03685 and HUW76_03690 are separated by 8 nucleotidesHUW76_03690 and HUW76_03695 are separated by 49 nucleotidesHUW76_03695 and HUW76_03700 are separated by 74 nucleotides HUW76_03680: HUW76_03680 - MotA/TolQ/ExbB proton channel family protein, at 736,307 to 736,915 _03680 HUW76_03685: HUW76_03685 - biopolymer transporter ExbD, at 736,918 to 737,307 _03685 HUW76_03690: HUW76_03690 - energy transducer TonB, at 737,316 to 738,104 _03690 HUW76_03695: HUW76_03695 - DUF1858 domain-containing protein, at 738,154 to 738,348 _03695 HUW76_03700: HUW76_03700 - phosphatidate cytidylyltransferase, at 738,423 to 739,226 _03700 Position (kb) 737 738 739Strain fitness (log2 ratio) -2 -1 0 1 2 3at 736.332 kb on + strandat 736.332 kb on + strandat 736.340 kb on - strandat 736.340 kb on - strandat 736.340 kb on - strandat 736.340 kb on - strandat 736.347 kb on - strandat 736.392 kb on + strand, within HUW76_03680at 736.490 kb on - strand, within HUW76_03680at 736.550 kb on + strand, within HUW76_03680at 736.550 kb on + strand, within HUW76_03680at 736.558 kb on - strand, within HUW76_03680at 736.566 kb on - strand, within HUW76_03680at 736.602 kb on + strand, within HUW76_03680at 736.640 kb on + strand, within HUW76_03680at 736.680 kb on - strand, within HUW76_03680at 736.697 kb on + strand, within HUW76_03680at 736.697 kb on + strand, within HUW76_03680at 736.734 kb on + strand, within HUW76_03680at 736.762 kb on + strand, within HUW76_03680at 736.764 kb on + strand, within HUW76_03680at 736.770 kb on - strand, within HUW76_03680at 736.770 kb on - strand, within HUW76_03680at 736.780 kb on + strand, within HUW76_03680at 736.783 kb on - strand, within HUW76_03680at 736.809 kb on - strand, within HUW76_03680at 737.012 kb on + strand, within HUW76_03685at 737.012 kb on + strand, within HUW76_03685at 737.046 kb on - strand, within HUW76_03685at 737.057 kb on + strand, within HUW76_03685at 737.057 kb on + strand, within HUW76_03685at 737.239 kb on + strand, within HUW76_03685at 737.239 kb on + strand, within HUW76_03685at 737.282 kb on + strandat 737.338 kb on + strandat 737.338 kb on + strandat 737.338 kb on + strandat 737.338 kb on + strandat 737.346 kb on - strandat 737.346 kb on - strandat 737.421 kb on + strand, within HUW76_03690at 737.506 kb on + strand, within HUW76_03690at 737.506 kb on + strand, within HUW76_03690at 737.632 kb on - strand, within HUW76_03690at 737.679 kb on + strand, within HUW76_03690at 737.740 kb on + strand, within HUW76_03690at 737.740 kb on + strand, within HUW76_03690at 737.747 kb on + strand, within HUW76_03690at 737.747 kb on + strand, within HUW76_03690at 737.747 kb on + strand, within HUW76_03690at 737.747 kb on + strand, within HUW76_03690at 737.747 kb on + strand, within HUW76_03690at 737.755 kb on - strand, within HUW76_03690at 737.769 kb on + strand, within HUW76_03690at 737.807 kb on + strand, within HUW76_03690at 737.815 kb on - strand, within HUW76_03690at 737.815 kb on - strand, within HUW76_03690at 737.817 kb on - strand, within HUW76_03690at 737.817 kb on - strand, within HUW76_03690at 737.829 kb on + strand, within HUW76_03690at 737.837 kb on - strand, within HUW76_03690at 737.864 kb on + strand, within HUW76_03690at 737.872 kb on - strand, within HUW76_03690at 737.879 kb on + strand, within HUW76_03690at 737.968 kb on + strand, within HUW76_03690at 737.990 kb on - strand, within HUW76_03690at 737.990 kb on - strand, within HUW76_03690at 738.021 kb on - strand, within HUW76_03690at 738.021 kb on - strand, within HUW76_03690at 738.144 kb on - strandat 738.220 kb on - strand, within HUW76_03695at 738.221 kb on - strand, within HUW76_03695at 738.240 kb on - strand, within HUW76_03695at 738.273 kb on - strand, within HUW76_03695at 738.326 kb on - strand, within HUW76_03695at 738.326 kb on - strand, within HUW76_03695at 738.336 kb on - strandat 738.385 kb on + strandat 738.385 kb on - strandat 738.385 kb on - strandat 738.475 kb on + strandat 738.475 kb on + strandat 738.477 kb on - strandat 738.477 kb on - strandat 738.480 kb on + strandat 738.480 kb on + strandat 738.480 kb on + strandat 738.480 kb on + strandat 738.480 kb on + strandat 738.483 kb on - strandat 738.488 kb on - strandat 738.488 kb on - strandat 738.489 kb on + strandat 738.489 kb on + strandat 738.593 kb on - strand, within HUW76_03700at 738.593 kb on - strand, within HUW76_03700at 738.659 kb on + strand, within HUW76_03700at 738.659 kb on + strand, within HUW76_03700at 738.659 kb on + strand, within HUW76_03700at 738.659 kb on + strand, within HUW76_03700at 738.659 kb on + strand, within HUW76_03700at 738.659 kb on + strand, within HUW76_03700at 738.659 kb on + strand, within HUW76_03700at 738.659 kb on + strand, within HUW76_03700at 738.659 kb on + strand, within HUW76_03700at 738.667 kb on - strand, within HUW76_03700at 738.667 kb on - strand, within HUW76_03700at 738.667 kb on - strand, within HUW76_03700at 738.667 kb on - strand, within HUW76_03700at 738.667 kb on - strand, within HUW76_03700at 738.750 kb on - strand, within HUW76_03700at 738.750 kb on - strand, within HUW76_03700at 738.806 kb on - strand, within HUW76_03700at 738.817 kb on - strand, within HUW76_03700at 738.817 kb on - strand, within HUW76_03700at 738.881 kb on + strand, within HUW76_03700at 738.881 kb on + strand, within HUW76_03700at 738.881 kb on + strand, within HUW76_03700at 738.889 kb on - strand, within HUW76_03700

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Per-strain Table

Position Strand Gene LocusTag Fraction G1M3_D7
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736,332 + +0.3
736,332 + -2.7
736,340 - +0.5
736,340 - +2.4
736,340 - -1.3
736,340 - +0.5
736,347 - -0.5
736,392 + HUW76_03680 0.14 +2.2
736,490 - HUW76_03680 0.30 +1.5
736,550 + HUW76_03680 0.40 -2.1
736,550 + HUW76_03680 0.40 +2.9
736,558 - HUW76_03680 0.41 +0.3
736,566 - HUW76_03680 0.43 +1.3
736,602 + HUW76_03680 0.48 -0.1
736,640 + HUW76_03680 0.55 +0.3
736,680 - HUW76_03680 0.61 +0.2
736,697 + HUW76_03680 0.64 +1.3
736,697 + HUW76_03680 0.64 -0.4
736,734 + HUW76_03680 0.70 +0.7
736,762 + HUW76_03680 0.75 -0.4
736,764 + HUW76_03680 0.75 -1.1
736,770 - HUW76_03680 0.76 -0.3
736,770 - HUW76_03680 0.76 +0.8
736,780 + HUW76_03680 0.78 -1.7
736,783 - HUW76_03680 0.78 -2.4
736,809 - HUW76_03680 0.82 -1.0
737,012 + HUW76_03685 0.24 +0.5
737,012 + HUW76_03685 0.24 -0.6
737,046 - HUW76_03685 0.33 -2.1
737,057 + HUW76_03685 0.36 +0.9
737,057 + HUW76_03685 0.36 +1.7
737,239 + HUW76_03685 0.82 +1.2
737,239 + HUW76_03685 0.82 +2.7
737,282 + +1.3
737,338 + +0.0
737,338 + -1.0
737,338 + +0.4
737,338 + +0.3
737,346 - +0.2
737,346 - +1.0
737,421 + HUW76_03690 0.13 +1.6
737,506 + HUW76_03690 0.24 +0.4
737,506 + HUW76_03690 0.24 -0.1
737,632 - HUW76_03690 0.40 +1.7
737,679 + HUW76_03690 0.46 +0.5
737,740 + HUW76_03690 0.54 +2.1
737,740 + HUW76_03690 0.54 +1.5
737,747 + HUW76_03690 0.55 -2.3
737,747 + HUW76_03690 0.55 +0.2
737,747 + HUW76_03690 0.55 +0.6
737,747 + HUW76_03690 0.55 +1.5
737,747 + HUW76_03690 0.55 -1.1
737,755 - HUW76_03690 0.56 +2.3
737,769 + HUW76_03690 0.57 -0.1
737,807 + HUW76_03690 0.62 -1.5
737,815 - HUW76_03690 0.63 +0.5
737,815 - HUW76_03690 0.63 +0.8
737,817 - HUW76_03690 0.63 +1.5
737,817 - HUW76_03690 0.63 +1.2
737,829 + HUW76_03690 0.65 +0.9
737,837 - HUW76_03690 0.66 +0.3
737,864 + HUW76_03690 0.69 -0.2
737,872 - HUW76_03690 0.70 -0.9
737,879 + HUW76_03690 0.71 +0.5
737,968 + HUW76_03690 0.83 +0.2
737,990 - HUW76_03690 0.85 -0.6
737,990 - HUW76_03690 0.85 +1.1
738,021 - HUW76_03690 0.89 -0.9
738,021 - HUW76_03690 0.89 -0.0
738,144 - +1.0
738,220 - HUW76_03695 0.34 +1.4
738,221 - HUW76_03695 0.34 +0.2
738,240 - HUW76_03695 0.44 +0.3
738,273 - HUW76_03695 0.61 +0.8
738,326 - HUW76_03695 0.88 +0.8
738,326 - HUW76_03695 0.88 +0.6
738,336 - +1.7
738,385 + +1.0
738,385 - -0.4
738,385 - -1.6
738,475 + -2.4
738,475 + -2.1
738,477 - -1.5
738,477 - -0.8
738,480 + +1.3
738,480 + -1.5
738,480 + +0.4
738,480 + +0.2
738,480 + +1.0
738,483 - +0.7
738,488 - +0.6
738,488 - -0.3
738,489 + -0.1
738,489 + +2.0
738,593 - HUW76_03700 0.21 +0.4
738,593 - HUW76_03700 0.21 -0.6
738,659 + HUW76_03700 0.29 +0.7
738,659 + HUW76_03700 0.29 +0.0
738,659 + HUW76_03700 0.29 +1.3
738,659 + HUW76_03700 0.29 +2.3
738,659 + HUW76_03700 0.29 +1.5
738,659 + HUW76_03700 0.29 +2.1
738,659 + HUW76_03700 0.29 +2.5
738,659 + HUW76_03700 0.29 -0.5
738,659 + HUW76_03700 0.29 -0.7
738,667 - HUW76_03700 0.30 +1.4
738,667 - HUW76_03700 0.30 +1.5
738,667 - HUW76_03700 0.30 -0.4
738,667 - HUW76_03700 0.30 -0.3
738,667 - HUW76_03700 0.30 -0.5
738,750 - HUW76_03700 0.41 -1.8
738,750 - HUW76_03700 0.41 -1.4
738,806 - HUW76_03700 0.48 -0.5
738,817 - HUW76_03700 0.49 -0.1
738,817 - HUW76_03700 0.49 -0.5
738,881 + HUW76_03700 0.57 +1.4
738,881 + HUW76_03700 0.57 +0.5
738,881 + HUW76_03700 0.57 -1.4
738,889 - HUW76_03700 0.58 -0.1

Or see this region's nucleotide sequence