Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_01485

Experiment: G1M3_D7

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHUW76_01470 and HUW76_01475 are separated by 98 nucleotidesHUW76_01475 and HUW76_01480 are separated by 44 nucleotidesHUW76_01480 and HUW76_01485 are separated by 275 nucleotidesHUW76_01485 and HUW76_01490 are separated by 194 nucleotides HUW76_01470: HUW76_01470 - proline--tRNA ligase, at 290,663 to 292,366 _01470 HUW76_01475: HUW76_01475 - 30S ribosomal protein S6, at 292,465 to 292,749 _01475 HUW76_01480: HUW76_01480 - 30S ribosomal protein S18, at 292,794 to 293,012 _01480 HUW76_01485: HUW76_01485 - M48 family metallopeptidase, at 293,288 to 294,091 _01485 HUW76_01490: HUW76_01490 - PAS domain-containing protein, at 294,286 to 295,836 _01490 Position (kb) 293 294 295Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 292.724 kb on + strandat 293.165 kb on + strandat 293.191 kb on + strandat 293.191 kb on + strandat 293.191 kb on + strandat 293.273 kb on + strandat 293.279 kb on + strandat 293.309 kb on + strandat 293.357 kb on + strandat 293.357 kb on + strandat 293.357 kb on + strandat 293.357 kb on + strandat 293.398 kb on + strand, within HUW76_01485at 293.429 kb on + strand, within HUW76_01485at 293.429 kb on + strand, within HUW76_01485at 293.446 kb on + strand, within HUW76_01485at 293.446 kb on + strand, within HUW76_01485at 293.446 kb on + strand, within HUW76_01485at 293.446 kb on + strand, within HUW76_01485at 293.446 kb on + strand, within HUW76_01485at 293.446 kb on + strand, within HUW76_01485at 293.446 kb on + strand, within HUW76_01485at 293.446 kb on + strand, within HUW76_01485at 293.446 kb on + strand, within HUW76_01485at 293.446 kb on + strand, within HUW76_01485at 293.446 kb on + strand, within HUW76_01485at 293.446 kb on + strand, within HUW76_01485at 293.446 kb on + strand, within HUW76_01485at 293.446 kb on + strand, within HUW76_01485at 293.446 kb on + strand, within HUW76_01485at 293.446 kb on + strand, within HUW76_01485at 293.446 kb on + strand, within HUW76_01485at 293.454 kb on - strand, within HUW76_01485at 293.454 kb on - strand, within HUW76_01485at 293.454 kb on - strand, within HUW76_01485at 293.454 kb on - strand, within HUW76_01485at 293.454 kb on - strand, within HUW76_01485at 293.454 kb on - strand, within HUW76_01485at 293.454 kb on - strand, within HUW76_01485at 293.454 kb on - strand, within HUW76_01485at 293.454 kb on - strand, within HUW76_01485at 293.454 kb on - strand, within HUW76_01485at 293.468 kb on + strand, within HUW76_01485at 293.469 kb on - strand, within HUW76_01485at 293.469 kb on - strand, within HUW76_01485at 293.469 kb on - strand, within HUW76_01485at 293.469 kb on - strand, within HUW76_01485at 293.488 kb on - strand, within HUW76_01485at 293.516 kb on - strand, within HUW76_01485at 293.523 kb on - strand, within HUW76_01485at 293.523 kb on - strand, within HUW76_01485at 293.523 kb on - strand, within HUW76_01485at 293.523 kb on - strand, within HUW76_01485at 293.560 kb on + strand, within HUW76_01485at 293.601 kb on + strand, within HUW76_01485at 293.611 kb on + strand, within HUW76_01485at 293.611 kb on + strand, within HUW76_01485at 293.619 kb on - strand, within HUW76_01485at 293.619 kb on - strand, within HUW76_01485at 293.685 kb on + strand, within HUW76_01485at 293.734 kb on + strand, within HUW76_01485at 293.734 kb on + strand, within HUW76_01485at 293.737 kb on - strand, within HUW76_01485at 293.817 kb on - strand, within HUW76_01485at 293.817 kb on - strand, within HUW76_01485at 293.821 kb on + strand, within HUW76_01485at 293.821 kb on + strand, within HUW76_01485at 293.821 kb on + strand, within HUW76_01485at 293.822 kb on - strand, within HUW76_01485at 293.822 kb on - strand, within HUW76_01485at 293.829 kb on - strand, within HUW76_01485at 293.829 kb on - strand, within HUW76_01485at 293.829 kb on - strand, within HUW76_01485at 293.829 kb on - strand, within HUW76_01485at 293.875 kb on + strand, within HUW76_01485at 293.900 kb on + strand, within HUW76_01485at 293.900 kb on + strand, within HUW76_01485at 293.935 kb on + strand, within HUW76_01485at 293.953 kb on + strand, within HUW76_01485at 293.954 kb on + strand, within HUW76_01485at 294.021 kb on + strandat 294.021 kb on + strandat 294.021 kb on + strandat 294.021 kb on + strandat 294.021 kb on + strandat 294.021 kb on + strandat 294.026 kb on + strandat 294.026 kb on + strandat 294.029 kb on - strandat 294.029 kb on - strandat 294.029 kb on - strandat 294.029 kb on - strandat 294.074 kb on - strandat 294.074 kb on - strandat 294.128 kb on + strandat 294.148 kb on - strandat 294.148 kb on - strandat 294.333 kb on + strandat 294.333 kb on + strandat 294.379 kb on - strandat 294.379 kb on - strandat 294.379 kb on - strandat 294.389 kb on - strandat 294.401 kb on - strandat 294.401 kb on - strandat 294.401 kb on - strandat 294.580 kb on + strand, within HUW76_01490at 294.580 kb on + strand, within HUW76_01490at 294.588 kb on - strand, within HUW76_01490at 294.598 kb on + strand, within HUW76_01490at 294.598 kb on + strand, within HUW76_01490at 294.644 kb on - strand, within HUW76_01490at 294.647 kb on + strand, within HUW76_01490at 294.714 kb on - strand, within HUW76_01490at 294.714 kb on - strand, within HUW76_01490at 294.715 kb on - strand, within HUW76_01490at 294.715 kb on - strand, within HUW76_01490at 294.724 kb on - strand, within HUW76_01490at 294.774 kb on + strand, within HUW76_01490at 294.777 kb on + strand, within HUW76_01490at 294.785 kb on + strand, within HUW76_01490at 294.785 kb on + strand, within HUW76_01490at 294.785 kb on + strand, within HUW76_01490at 294.787 kb on + strand, within HUW76_01490at 294.787 kb on + strand, within HUW76_01490at 294.795 kb on - strand, within HUW76_01490at 294.795 kb on - strand, within HUW76_01490at 294.795 kb on - strand, within HUW76_01490at 294.795 kb on - strand, within HUW76_01490at 294.795 kb on - strand, within HUW76_01490at 294.795 kb on - strand, within HUW76_01490at 294.795 kb on - strand, within HUW76_01490at 294.805 kb on - strand, within HUW76_01490at 294.813 kb on - strand, within HUW76_01490at 294.813 kb on - strand, within HUW76_01490at 294.871 kb on - strand, within HUW76_01490at 294.939 kb on + strand, within HUW76_01490at 294.939 kb on + strand, within HUW76_01490at 294.944 kb on + strand, within HUW76_01490at 294.947 kb on - strand, within HUW76_01490at 294.947 kb on - strand, within HUW76_01490at 294.947 kb on - strand, within HUW76_01490at 295.030 kb on + strand, within HUW76_01490at 295.030 kb on + strand, within HUW76_01490at 295.042 kb on + strand, within HUW76_01490at 295.042 kb on + strand, within HUW76_01490

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction G1M3_D7
remove
292,724 + -0.3
293,165 + -0.8
293,191 + -1.2
293,191 + +6.1
293,191 + +0.5
293,273 + +0.2
293,279 + +0.4
293,309 + +0.6
293,357 + -2.0
293,357 + +0.4
293,357 + -1.6
293,357 + -2.2
293,398 + HUW76_01485 0.14 +0.9
293,429 + HUW76_01485 0.18 -0.2
293,429 + HUW76_01485 0.18 -1.4
293,446 + HUW76_01485 0.20 -0.1
293,446 + HUW76_01485 0.20 -0.7
293,446 + HUW76_01485 0.20 -0.3
293,446 + HUW76_01485 0.20 +1.4
293,446 + HUW76_01485 0.20 -2.6
293,446 + HUW76_01485 0.20 -1.1
293,446 + HUW76_01485 0.20 +0.4
293,446 + HUW76_01485 0.20 +0.3
293,446 + HUW76_01485 0.20 +0.5
293,446 + HUW76_01485 0.20 -1.2
293,446 + HUW76_01485 0.20 +0.5
293,446 + HUW76_01485 0.20 +0.6
293,446 + HUW76_01485 0.20 -0.2
293,446 + HUW76_01485 0.20 +0.2
293,446 + HUW76_01485 0.20 +0.4
293,446 + HUW76_01485 0.20 +2.6
293,446 + HUW76_01485 0.20 -2.5
293,454 - HUW76_01485 0.21 -1.3
293,454 - HUW76_01485 0.21 +0.6
293,454 - HUW76_01485 0.21 -0.8
293,454 - HUW76_01485 0.21 -0.9
293,454 - HUW76_01485 0.21 +0.0
293,454 - HUW76_01485 0.21 -0.2
293,454 - HUW76_01485 0.21 +3.5
293,454 - HUW76_01485 0.21 +0.1
293,454 - HUW76_01485 0.21 +0.5
293,454 - HUW76_01485 0.21 +2.1
293,468 + HUW76_01485 0.22 -0.3
293,469 - HUW76_01485 0.23 -1.9
293,469 - HUW76_01485 0.23 -0.2
293,469 - HUW76_01485 0.23 -1.9
293,469 - HUW76_01485 0.23 +1.4
293,488 - HUW76_01485 0.25 +1.1
293,516 - HUW76_01485 0.28 -1.1
293,523 - HUW76_01485 0.29 -2.2
293,523 - HUW76_01485 0.29 +0.8
293,523 - HUW76_01485 0.29 +0.1
293,523 - HUW76_01485 0.29 +0.4
293,560 + HUW76_01485 0.34 -1.0
293,601 + HUW76_01485 0.39 +0.6
293,611 + HUW76_01485 0.40 +1.2
293,611 + HUW76_01485 0.40 -0.9
293,619 - HUW76_01485 0.41 -0.4
293,619 - HUW76_01485 0.41 +3.1
293,685 + HUW76_01485 0.49 -1.0
293,734 + HUW76_01485 0.55 -0.4
293,734 + HUW76_01485 0.55 +1.6
293,737 - HUW76_01485 0.56 -0.1
293,817 - HUW76_01485 0.66 +0.9
293,817 - HUW76_01485 0.66 -1.6
293,821 + HUW76_01485 0.66 -2.1
293,821 + HUW76_01485 0.66 -1.3
293,821 + HUW76_01485 0.66 -0.2
293,822 - HUW76_01485 0.66 +0.1
293,822 - HUW76_01485 0.66 -0.3
293,829 - HUW76_01485 0.67 +2.4
293,829 - HUW76_01485 0.67 +0.5
293,829 - HUW76_01485 0.67 +1.0
293,829 - HUW76_01485 0.67 +0.3
293,875 + HUW76_01485 0.73 -2.8
293,900 + HUW76_01485 0.76 -0.9
293,900 + HUW76_01485 0.76 -0.3
293,935 + HUW76_01485 0.80 -1.5
293,953 + HUW76_01485 0.83 -1.2
293,954 + HUW76_01485 0.83 +0.0
294,021 + -0.1
294,021 + +0.1
294,021 + +0.8
294,021 + +0.1
294,021 + -0.8
294,021 + +0.4
294,026 + -0.9
294,026 + -1.1
294,029 - -1.1
294,029 - +1.1
294,029 - -1.5
294,029 - -0.3
294,074 - -0.2
294,074 - -0.3
294,128 + -1.3
294,148 - +0.2
294,148 - +0.0
294,333 + +0.9
294,333 + -0.1
294,379 - -0.8
294,379 - -0.5
294,379 - -0.8
294,389 - +0.1
294,401 - +1.7
294,401 - +0.9
294,401 - +0.2
294,580 + HUW76_01490 0.19 +0.6
294,580 + HUW76_01490 0.19 +0.6
294,588 - HUW76_01490 0.19 -0.5
294,598 + HUW76_01490 0.20 -0.6
294,598 + HUW76_01490 0.20 +0.9
294,644 - HUW76_01490 0.23 -0.4
294,647 + HUW76_01490 0.23 -1.6
294,714 - HUW76_01490 0.28 -2.6
294,714 - HUW76_01490 0.28 +0.5
294,715 - HUW76_01490 0.28 -0.6
294,715 - HUW76_01490 0.28 -0.5
294,724 - HUW76_01490 0.28 -1.2
294,774 + HUW76_01490 0.31 +1.5
294,777 + HUW76_01490 0.32 -0.4
294,785 + HUW76_01490 0.32 +0.2
294,785 + HUW76_01490 0.32 +1.4
294,785 + HUW76_01490 0.32 +0.7
294,787 + HUW76_01490 0.32 -1.8
294,787 + HUW76_01490 0.32 -0.7
294,795 - HUW76_01490 0.33 -0.4
294,795 - HUW76_01490 0.33 +1.8
294,795 - HUW76_01490 0.33 +1.3
294,795 - HUW76_01490 0.33 -0.7
294,795 - HUW76_01490 0.33 +0.5
294,795 - HUW76_01490 0.33 -0.4
294,795 - HUW76_01490 0.33 -0.7
294,805 - HUW76_01490 0.33 -1.1
294,813 - HUW76_01490 0.34 -1.9
294,813 - HUW76_01490 0.34 -1.6
294,871 - HUW76_01490 0.38 -0.7
294,939 + HUW76_01490 0.42 +0.1
294,939 + HUW76_01490 0.42 +1.3
294,944 + HUW76_01490 0.42 +1.2
294,947 - HUW76_01490 0.43 -0.2
294,947 - HUW76_01490 0.43 -0.5
294,947 - HUW76_01490 0.43 -1.5
295,030 + HUW76_01490 0.48 +3.8
295,030 + HUW76_01490 0.48 +0.3
295,042 + HUW76_01490 0.49 +1.2
295,042 + HUW76_01490 0.49 +1.8

Or see this region's nucleotide sequence