Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_00805

Experiment: G1M3_D7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_00795 and HUW76_00800 are separated by 130 nucleotidesHUW76_00800 and HUW76_00805 are separated by 25 nucleotidesHUW76_00805 and HUW76_00810 are separated by 20 nucleotidesHUW76_00810 and HUW76_00815 are separated by 33 nucleotides HUW76_00795: HUW76_00795 - D-glycero-beta-D-manno-heptose-7-phosphate kinase, at 150,267 to 151,232 _00795 HUW76_00800: HUW76_00800 - hypothetical protein, at 151,363 to 151,821 _00800 HUW76_00805: HUW76_00805 - hypothetical protein, at 151,847 to 152,308 _00805 HUW76_00810: HUW76_00810 - hypothetical protein, at 152,329 to 152,784 _00810 HUW76_00815: HUW76_00815 - hypothetical protein, at 152,818 to 153,273 _00815 Position (kb) 151 152 153Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 151.282 kb on + strandat 151.362 kb on - strandat 151.427 kb on + strand, within HUW76_00800at 151.435 kb on - strand, within HUW76_00800at 151.435 kb on - strand, within HUW76_00800at 151.435 kb on - strand, within HUW76_00800at 151.457 kb on + strand, within HUW76_00800at 151.457 kb on + strand, within HUW76_00800at 151.532 kb on + strand, within HUW76_00800at 151.591 kb on + strand, within HUW76_00800at 151.591 kb on + strand, within HUW76_00800at 151.593 kb on + strand, within HUW76_00800at 151.593 kb on + strand, within HUW76_00800at 151.593 kb on + strand, within HUW76_00800at 151.599 kb on - strand, within HUW76_00800at 151.599 kb on - strand, within HUW76_00800at 151.601 kb on - strand, within HUW76_00800at 151.601 kb on - strand, within HUW76_00800at 151.603 kb on + strand, within HUW76_00800at 151.603 kb on + strand, within HUW76_00800at 151.624 kb on - strand, within HUW76_00800at 151.644 kb on - strand, within HUW76_00800at 151.649 kb on + strand, within HUW76_00800at 151.650 kb on + strand, within HUW76_00800at 151.650 kb on - strand, within HUW76_00800at 151.658 kb on - strand, within HUW76_00800at 151.658 kb on - strand, within HUW76_00800at 151.658 kb on - strand, within HUW76_00800at 151.658 kb on - strand, within HUW76_00800at 151.658 kb on - strand, within HUW76_00800at 151.658 kb on - strand, within HUW76_00800at 151.787 kb on - strandat 151.787 kb on - strandat 151.787 kb on - strandat 151.787 kb on - strandat 151.887 kb on - strandat 151.893 kb on + strandat 151.909 kb on - strand, within HUW76_00805at 151.968 kb on + strand, within HUW76_00805at 152.002 kb on + strand, within HUW76_00805at 152.002 kb on + strand, within HUW76_00805at 152.012 kb on - strand, within HUW76_00805at 152.018 kb on - strand, within HUW76_00805at 152.027 kb on + strand, within HUW76_00805at 152.035 kb on + strand, within HUW76_00805at 152.035 kb on + strand, within HUW76_00805at 152.035 kb on + strand, within HUW76_00805at 152.043 kb on - strand, within HUW76_00805at 152.076 kb on + strand, within HUW76_00805at 152.076 kb on + strand, within HUW76_00805at 152.088 kb on - strand, within HUW76_00805at 152.089 kb on - strand, within HUW76_00805at 152.089 kb on - strand, within HUW76_00805at 152.089 kb on - strand, within HUW76_00805at 152.089 kb on - strand, within HUW76_00805at 152.125 kb on + strand, within HUW76_00805at 152.125 kb on + strand, within HUW76_00805at 152.150 kb on + strand, within HUW76_00805at 152.150 kb on + strand, within HUW76_00805at 152.161 kb on + strand, within HUW76_00805at 152.166 kb on + strand, within HUW76_00805at 152.257 kb on + strand, within HUW76_00805at 152.322 kb on - strandat 152.323 kb on - strandat 152.323 kb on - strandat 152.366 kb on + strandat 152.374 kb on - strandat 152.374 kb on - strandat 152.494 kb on - strand, within HUW76_00810at 152.529 kb on + strand, within HUW76_00810at 152.529 kb on + strand, within HUW76_00810at 152.560 kb on + strand, within HUW76_00810at 152.560 kb on + strand, within HUW76_00810at 152.565 kb on - strand, within HUW76_00810at 152.574 kb on - strand, within HUW76_00810at 152.574 kb on - strand, within HUW76_00810at 152.595 kb on - strand, within HUW76_00810at 152.595 kb on - strand, within HUW76_00810at 152.629 kb on + strand, within HUW76_00810at 152.629 kb on + strand, within HUW76_00810at 152.635 kb on + strand, within HUW76_00810at 152.643 kb on - strand, within HUW76_00810at 152.643 kb on - strand, within HUW76_00810at 152.669 kb on + strand, within HUW76_00810at 152.670 kb on + strand, within HUW76_00810at 152.670 kb on + strand, within HUW76_00810at 152.670 kb on + strand, within HUW76_00810at 152.670 kb on + strand, within HUW76_00810at 152.670 kb on + strand, within HUW76_00810at 152.670 kb on + strand, within HUW76_00810at 152.670 kb on + strand, within HUW76_00810at 152.670 kb on + strand, within HUW76_00810at 152.670 kb on + strand, within HUW76_00810at 152.670 kb on + strand, within HUW76_00810at 152.678 kb on - strand, within HUW76_00810at 152.678 kb on - strand, within HUW76_00810at 152.678 kb on - strand, within HUW76_00810at 152.678 kb on - strand, within HUW76_00810at 152.678 kb on - strand, within HUW76_00810at 152.678 kb on - strand, within HUW76_00810at 152.678 kb on - strand, within HUW76_00810at 152.678 kb on - strand, within HUW76_00810at 152.678 kb on - strand, within HUW76_00810at 152.697 kb on + strand, within HUW76_00810at 152.697 kb on + strand, within HUW76_00810at 152.705 kb on - strand, within HUW76_00810at 152.705 kb on - strand, within HUW76_00810at 152.712 kb on + strand, within HUW76_00810at 152.712 kb on + strand, within HUW76_00810at 152.728 kb on + strand, within HUW76_00810at 152.857 kb on + strandat 152.910 kb on - strand, within HUW76_00815at 152.911 kb on + strand, within HUW76_00815at 152.911 kb on + strand, within HUW76_00815at 152.911 kb on + strand, within HUW76_00815at 152.911 kb on + strand, within HUW76_00815at 152.912 kb on + strand, within HUW76_00815at 152.912 kb on + strand, within HUW76_00815at 152.913 kb on + strand, within HUW76_00815at 152.913 kb on + strand, within HUW76_00815at 152.913 kb on + strand, within HUW76_00815at 152.913 kb on + strand, within HUW76_00815at 152.921 kb on - strand, within HUW76_00815at 152.931 kb on - strand, within HUW76_00815at 152.935 kb on + strand, within HUW76_00815at 152.935 kb on + strand, within HUW76_00815at 152.935 kb on + strand, within HUW76_00815at 152.989 kb on + strand, within HUW76_00815at 152.989 kb on + strand, within HUW76_00815at 152.998 kb on + strand, within HUW76_00815at 153.050 kb on + strand, within HUW76_00815at 153.057 kb on + strand, within HUW76_00815at 153.068 kb on + strand, within HUW76_00815at 153.068 kb on + strand, within HUW76_00815at 153.074 kb on - strand, within HUW76_00815at 153.077 kb on - strand, within HUW76_00815at 153.077 kb on - strand, within HUW76_00815at 153.140 kb on - strand, within HUW76_00815at 153.140 kb on - strand, within HUW76_00815at 153.140 kb on - strand, within HUW76_00815at 153.167 kb on - strand, within HUW76_00815at 153.167 kb on - strand, within HUW76_00815at 153.181 kb on + strand, within HUW76_00815at 153.181 kb on + strand, within HUW76_00815at 153.181 kb on + strand, within HUW76_00815at 153.189 kb on - strand, within HUW76_00815at 153.189 kb on - strand, within HUW76_00815at 153.302 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction G1M3_D7
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151,282 + +0.1
151,362 - -2.3
151,427 + HUW76_00800 0.14 +2.5
151,435 - HUW76_00800 0.16 -1.5
151,435 - HUW76_00800 0.16 -0.4
151,435 - HUW76_00800 0.16 -0.7
151,457 + HUW76_00800 0.20 +0.0
151,457 + HUW76_00800 0.20 +0.6
151,532 + HUW76_00800 0.37 -1.2
151,591 + HUW76_00800 0.50 +1.3
151,591 + HUW76_00800 0.50 +0.0
151,593 + HUW76_00800 0.50 +0.8
151,593 + HUW76_00800 0.50 +1.4
151,593 + HUW76_00800 0.50 -0.4
151,599 - HUW76_00800 0.51 -0.3
151,599 - HUW76_00800 0.51 +1.3
151,601 - HUW76_00800 0.52 -0.1
151,601 - HUW76_00800 0.52 +0.6
151,603 + HUW76_00800 0.52 +0.8
151,603 + HUW76_00800 0.52 -0.5
151,624 - HUW76_00800 0.57 +1.2
151,644 - HUW76_00800 0.61 +1.6
151,649 + HUW76_00800 0.62 +0.1
151,650 + HUW76_00800 0.63 +1.5
151,650 - HUW76_00800 0.63 +0.2
151,658 - HUW76_00800 0.64 +0.0
151,658 - HUW76_00800 0.64 -0.8
151,658 - HUW76_00800 0.64 +1.5
151,658 - HUW76_00800 0.64 -0.5
151,658 - HUW76_00800 0.64 -0.2
151,658 - HUW76_00800 0.64 -0.5
151,787 - +1.8
151,787 - -0.4
151,787 - +0.7
151,787 - -0.3
151,887 - +0.0
151,893 + -0.8
151,909 - HUW76_00805 0.13 -0.9
151,968 + HUW76_00805 0.26 +0.4
152,002 + HUW76_00805 0.34 +1.3
152,002 + HUW76_00805 0.34 -1.8
152,012 - HUW76_00805 0.36 -1.2
152,018 - HUW76_00805 0.37 -1.4
152,027 + HUW76_00805 0.39 +0.5
152,035 + HUW76_00805 0.41 -2.1
152,035 + HUW76_00805 0.41 -0.5
152,035 + HUW76_00805 0.41 -1.9
152,043 - HUW76_00805 0.42 +1.0
152,076 + HUW76_00805 0.50 -1.1
152,076 + HUW76_00805 0.50 -0.5
152,088 - HUW76_00805 0.52 -0.6
152,089 - HUW76_00805 0.52 +0.7
152,089 - HUW76_00805 0.52 +1.2
152,089 - HUW76_00805 0.52 +2.0
152,089 - HUW76_00805 0.52 +1.2
152,125 + HUW76_00805 0.60 +1.1
152,125 + HUW76_00805 0.60 -0.8
152,150 + HUW76_00805 0.66 +0.1
152,150 + HUW76_00805 0.66 -0.2
152,161 + HUW76_00805 0.68 +0.8
152,166 + HUW76_00805 0.69 +0.7
152,257 + HUW76_00805 0.89 +1.8
152,322 - +0.6
152,323 - -0.5
152,323 - -2.3
152,366 + -1.2
152,374 - -1.1
152,374 - -0.4
152,494 - HUW76_00810 0.36 -0.0
152,529 + HUW76_00810 0.44 +0.7
152,529 + HUW76_00810 0.44 -0.4
152,560 + HUW76_00810 0.51 -0.2
152,560 + HUW76_00810 0.51 -0.2
152,565 - HUW76_00810 0.52 +0.1
152,574 - HUW76_00810 0.54 -1.6
152,574 - HUW76_00810 0.54 -1.1
152,595 - HUW76_00810 0.58 +1.1
152,595 - HUW76_00810 0.58 -0.5
152,629 + HUW76_00810 0.66 -1.9
152,629 + HUW76_00810 0.66 -0.2
152,635 + HUW76_00810 0.67 +0.4
152,643 - HUW76_00810 0.69 +0.0
152,643 - HUW76_00810 0.69 -1.7
152,669 + HUW76_00810 0.75 -0.9
152,670 + HUW76_00810 0.75 -0.3
152,670 + HUW76_00810 0.75 -0.3
152,670 + HUW76_00810 0.75 -0.5
152,670 + HUW76_00810 0.75 -1.3
152,670 + HUW76_00810 0.75 -0.8
152,670 + HUW76_00810 0.75 +2.1
152,670 + HUW76_00810 0.75 -1.2
152,670 + HUW76_00810 0.75 -0.2
152,670 + HUW76_00810 0.75 +1.7
152,670 + HUW76_00810 0.75 -0.3
152,678 - HUW76_00810 0.77 +0.5
152,678 - HUW76_00810 0.77 +0.7
152,678 - HUW76_00810 0.77 -0.7
152,678 - HUW76_00810 0.77 -1.0
152,678 - HUW76_00810 0.77 -0.7
152,678 - HUW76_00810 0.77 -0.8
152,678 - HUW76_00810 0.77 -0.3
152,678 - HUW76_00810 0.77 +0.3
152,678 - HUW76_00810 0.77 +0.4
152,697 + HUW76_00810 0.81 -0.3
152,697 + HUW76_00810 0.81 -0.9
152,705 - HUW76_00810 0.82 -2.3
152,705 - HUW76_00810 0.82 -0.9
152,712 + HUW76_00810 0.84 +0.0
152,712 + HUW76_00810 0.84 +1.3
152,728 + HUW76_00810 0.88 -0.3
152,857 + +0.2
152,910 - HUW76_00815 0.20 -0.4
152,911 + HUW76_00815 0.20 -0.8
152,911 + HUW76_00815 0.20 -0.2
152,911 + HUW76_00815 0.20 -0.9
152,911 + HUW76_00815 0.20 -0.8
152,912 + HUW76_00815 0.21 -3.3
152,912 + HUW76_00815 0.21 +0.2
152,913 + HUW76_00815 0.21 -2.4
152,913 + HUW76_00815 0.21 -0.6
152,913 + HUW76_00815 0.21 +0.2
152,913 + HUW76_00815 0.21 -1.5
152,921 - HUW76_00815 0.23 -2.4
152,931 - HUW76_00815 0.25 +1.3
152,935 + HUW76_00815 0.26 -0.7
152,935 + HUW76_00815 0.26 +0.5
152,935 + HUW76_00815 0.26 +1.3
152,989 + HUW76_00815 0.38 +1.0
152,989 + HUW76_00815 0.38 -0.6
152,998 + HUW76_00815 0.39 +0.5
153,050 + HUW76_00815 0.51 -2.6
153,057 + HUW76_00815 0.52 +0.3
153,068 + HUW76_00815 0.55 -1.9
153,068 + HUW76_00815 0.55 -1.4
153,074 - HUW76_00815 0.56 +2.1
153,077 - HUW76_00815 0.57 +0.4
153,077 - HUW76_00815 0.57 +0.8
153,140 - HUW76_00815 0.71 +1.8
153,140 - HUW76_00815 0.71 +2.1
153,140 - HUW76_00815 0.71 +0.1
153,167 - HUW76_00815 0.77 +1.0
153,167 - HUW76_00815 0.77 -1.1
153,181 + HUW76_00815 0.80 -1.0
153,181 + HUW76_00815 0.80 -1.2
153,181 + HUW76_00815 0.80 +0.4
153,189 - HUW76_00815 0.81 +2.4
153,189 - HUW76_00815 0.81 -0.6
153,302 + -1.6

Or see this region's nucleotide sequence