Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_00710

Experiment: G1M3_D7

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHUW76_00700 and HUW76_00705 are separated by 48 nucleotidesHUW76_00705 and HUW76_00710 are separated by 96 nucleotidesHUW76_00710 and HUW76_00715 are separated by 103 nucleotides HUW76_00700: HUW76_00700 - hypothetical protein, at 133,019 to 133,438 _00700 HUW76_00705: HUW76_00705 - DUF4198 domain-containing protein, at 133,487 to 134,281 _00705 HUW76_00710: HUW76_00710 - EamA family transporter, at 134,378 to 135,232 _00710 HUW76_00715: HUW76_00715 - hypothetical protein, at 135,336 to 136,532 _00715 Position (kb) 134 135 136Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 133.418 kb on + strandat 133.418 kb on + strandat 133.418 kb on + strandat 133.418 kb on + strandat 133.446 kb on + strandat 133.451 kb on + strandat 133.451 kb on + strandat 133.475 kb on + strandat 133.505 kb on - strandat 133.610 kb on + strand, within HUW76_00705at 133.619 kb on + strand, within HUW76_00705at 133.626 kb on - strand, within HUW76_00705at 133.626 kb on - strand, within HUW76_00705at 133.646 kb on + strand, within HUW76_00705at 133.646 kb on + strand, within HUW76_00705at 133.646 kb on + strand, within HUW76_00705at 133.703 kb on + strand, within HUW76_00705at 133.711 kb on - strand, within HUW76_00705at 133.711 kb on - strand, within HUW76_00705at 133.761 kb on + strand, within HUW76_00705at 133.761 kb on + strand, within HUW76_00705at 133.769 kb on + strand, within HUW76_00705at 133.800 kb on + strand, within HUW76_00705at 133.800 kb on - strand, within HUW76_00705at 133.800 kb on - strand, within HUW76_00705at 133.802 kb on + strand, within HUW76_00705at 133.802 kb on + strand, within HUW76_00705at 133.802 kb on + strand, within HUW76_00705at 133.802 kb on + strand, within HUW76_00705at 133.879 kb on + strand, within HUW76_00705at 133.879 kb on + strand, within HUW76_00705at 133.879 kb on + strand, within HUW76_00705at 133.887 kb on - strand, within HUW76_00705at 133.887 kb on - strand, within HUW76_00705at 133.923 kb on + strand, within HUW76_00705at 133.923 kb on + strand, within HUW76_00705at 133.923 kb on + strand, within HUW76_00705at 133.923 kb on + strand, within HUW76_00705at 133.931 kb on - strand, within HUW76_00705at 133.931 kb on - strand, within HUW76_00705at 133.947 kb on + strand, within HUW76_00705at 133.947 kb on + strand, within HUW76_00705at 133.947 kb on + strand, within HUW76_00705at 133.947 kb on + strand, within HUW76_00705at 133.947 kb on + strand, within HUW76_00705at 133.947 kb on + strand, within HUW76_00705at 133.947 kb on + strand, within HUW76_00705at 133.947 kb on + strand, within HUW76_00705at 133.947 kb on + strand, within HUW76_00705at 133.947 kb on + strand, within HUW76_00705at 133.947 kb on + strand, within HUW76_00705at 133.947 kb on + strand, within HUW76_00705at 133.955 kb on - strand, within HUW76_00705at 133.955 kb on - strand, within HUW76_00705at 133.955 kb on - strand, within HUW76_00705at 133.955 kb on - strand, within HUW76_00705at 133.991 kb on - strand, within HUW76_00705at 134.033 kb on + strand, within HUW76_00705at 134.050 kb on - strand, within HUW76_00705at 134.050 kb on - strand, within HUW76_00705at 134.066 kb on - strand, within HUW76_00705at 134.066 kb on - strand, within HUW76_00705at 134.066 kb on - strand, within HUW76_00705at 134.079 kb on - strand, within HUW76_00705at 134.079 kb on - strand, within HUW76_00705at 134.098 kb on + strand, within HUW76_00705at 134.104 kb on + strand, within HUW76_00705at 134.104 kb on + strand, within HUW76_00705at 134.139 kb on + strand, within HUW76_00705at 134.139 kb on + strand, within HUW76_00705at 134.139 kb on + strand, within HUW76_00705at 134.139 kb on + strand, within HUW76_00705at 134.147 kb on + strand, within HUW76_00705at 134.147 kb on - strand, within HUW76_00705at 134.147 kb on - strand, within HUW76_00705at 134.147 kb on - strand, within HUW76_00705at 134.158 kb on + strand, within HUW76_00705at 134.158 kb on + strand, within HUW76_00705at 134.166 kb on - strand, within HUW76_00705at 134.166 kb on - strand, within HUW76_00705at 134.198 kb on - strand, within HUW76_00705at 134.219 kb on - strandat 134.222 kb on - strandat 134.222 kb on - strandat 134.443 kb on - strandat 134.457 kb on - strandat 134.466 kb on - strand, within HUW76_00710at 134.466 kb on - strand, within HUW76_00710at 134.466 kb on - strand, within HUW76_00710at 134.491 kb on + strand, within HUW76_00710at 134.491 kb on + strand, within HUW76_00710at 134.512 kb on - strand, within HUW76_00710at 134.512 kb on - strand, within HUW76_00710at 134.543 kb on - strand, within HUW76_00710at 134.549 kb on - strand, within HUW76_00710at 134.549 kb on - strand, within HUW76_00710at 134.574 kb on - strand, within HUW76_00710at 134.613 kb on - strand, within HUW76_00710at 134.671 kb on - strand, within HUW76_00710at 134.812 kb on - strand, within HUW76_00710at 134.817 kb on + strand, within HUW76_00710at 134.817 kb on + strand, within HUW76_00710at 134.817 kb on - strand, within HUW76_00710at 134.834 kb on - strand, within HUW76_00710at 134.942 kb on + strand, within HUW76_00710at 134.942 kb on + strand, within HUW76_00710at 134.962 kb on - strand, within HUW76_00710at 134.969 kb on + strand, within HUW76_00710at 134.972 kb on - strand, within HUW76_00710at 134.972 kb on - strand, within HUW76_00710at 134.977 kb on - strand, within HUW76_00710at 134.977 kb on - strand, within HUW76_00710at 135.081 kb on + strand, within HUW76_00710at 135.127 kb on - strand, within HUW76_00710at 135.127 kb on - strand, within HUW76_00710at 135.127 kb on - strand, within HUW76_00710at 135.127 kb on - strand, within HUW76_00710at 135.129 kb on + strand, within HUW76_00710at 135.152 kb on - strandat 135.152 kb on - strandat 135.166 kb on + strandat 135.166 kb on + strandat 135.171 kb on + strandat 135.171 kb on + strandat 135.171 kb on + strandat 135.179 kb on - strandat 135.179 kb on - strandat 135.190 kb on - strandat 135.222 kb on - strandat 135.309 kb on - strandat 135.309 kb on - strandat 135.373 kb on - strandat 135.373 kb on - strandat 135.374 kb on + strandat 135.375 kb on + strandat 135.375 kb on + strandat 135.382 kb on - strandat 135.382 kb on - strandat 135.383 kb on - strandat 135.383 kb on - strandat 135.383 kb on - strandat 135.383 kb on - strandat 135.396 kb on - strandat 135.404 kb on - strandat 135.404 kb on - strandat 135.465 kb on + strand, within HUW76_00715at 135.465 kb on + strand, within HUW76_00715at 135.473 kb on - strand, within HUW76_00715at 135.519 kb on + strand, within HUW76_00715at 135.519 kb on + strand, within HUW76_00715at 135.519 kb on + strand, within HUW76_00715at 135.519 kb on + strand, within HUW76_00715at 135.519 kb on + strand, within HUW76_00715at 135.519 kb on + strand, within HUW76_00715at 135.519 kb on + strand, within HUW76_00715at 135.527 kb on - strand, within HUW76_00715at 135.527 kb on - strand, within HUW76_00715at 135.527 kb on - strand, within HUW76_00715at 135.527 kb on - strand, within HUW76_00715at 135.527 kb on - strand, within HUW76_00715at 135.527 kb on - strand, within HUW76_00715at 135.527 kb on - strand, within HUW76_00715at 135.583 kb on + strand, within HUW76_00715at 135.583 kb on + strand, within HUW76_00715at 135.583 kb on + strand, within HUW76_00715at 135.591 kb on - strand, within HUW76_00715at 135.591 kb on - strand, within HUW76_00715at 135.628 kb on - strand, within HUW76_00715at 135.663 kb on + strand, within HUW76_00715at 135.663 kb on + strand, within HUW76_00715at 135.683 kb on - strand, within HUW76_00715at 135.683 kb on - strand, within HUW76_00715at 135.870 kb on + strand, within HUW76_00715at 135.870 kb on + strand, within HUW76_00715at 135.882 kb on + strand, within HUW76_00715at 135.882 kb on + strand, within HUW76_00715at 135.882 kb on + strand, within HUW76_00715at 135.890 kb on - strand, within HUW76_00715at 135.907 kb on - strand, within HUW76_00715at 135.907 kb on - strand, within HUW76_00715at 135.943 kb on - strand, within HUW76_00715at 135.943 kb on - strand, within HUW76_00715at 135.978 kb on - strand, within HUW76_00715at 135.984 kb on - strand, within HUW76_00715at 135.984 kb on - strand, within HUW76_00715at 136.029 kb on + strand, within HUW76_00715at 136.029 kb on + strand, within HUW76_00715at 136.065 kb on - strand, within HUW76_00715at 136.181 kb on + strand, within HUW76_00715at 136.181 kb on + strand, within HUW76_00715at 136.181 kb on + strand, within HUW76_00715at 136.181 kb on + strand, within HUW76_00715at 136.202 kb on + strand, within HUW76_00715at 136.202 kb on + strand, within HUW76_00715at 136.223 kb on + strand, within HUW76_00715at 136.223 kb on + strand, within HUW76_00715at 136.223 kb on + strand, within HUW76_00715

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction G1M3_D7
remove
133,418 + -0.4
133,418 + -0.2
133,418 + -3.5
133,418 + +0.4
133,446 + +0.4
133,451 + +0.3
133,451 + -0.8
133,475 + +0.6
133,505 - -0.2
133,610 + HUW76_00705 0.15 -1.0
133,619 + HUW76_00705 0.17 -0.0
133,626 - HUW76_00705 0.17 +1.7
133,626 - HUW76_00705 0.17 +1.0
133,646 + HUW76_00705 0.20 -0.4
133,646 + HUW76_00705 0.20 +0.4
133,646 + HUW76_00705 0.20 +0.9
133,703 + HUW76_00705 0.27 +0.8
133,711 - HUW76_00705 0.28 -1.1
133,711 - HUW76_00705 0.28 +1.4
133,761 + HUW76_00705 0.34 -1.3
133,761 + HUW76_00705 0.34 +0.8
133,769 + HUW76_00705 0.35 +1.6
133,800 + HUW76_00705 0.39 -0.0
133,800 - HUW76_00705 0.39 +1.3
133,800 - HUW76_00705 0.39 -2.1
133,802 + HUW76_00705 0.40 +0.1
133,802 + HUW76_00705 0.40 -0.1
133,802 + HUW76_00705 0.40 +0.0
133,802 + HUW76_00705 0.40 -0.8
133,879 + HUW76_00705 0.49 -1.7
133,879 + HUW76_00705 0.49 -1.8
133,879 + HUW76_00705 0.49 -0.1
133,887 - HUW76_00705 0.50 +1.6
133,887 - HUW76_00705 0.50 +2.3
133,923 + HUW76_00705 0.55 +1.1
133,923 + HUW76_00705 0.55 -0.6
133,923 + HUW76_00705 0.55 -1.0
133,923 + HUW76_00705 0.55 +1.1
133,931 - HUW76_00705 0.56 +0.1
133,931 - HUW76_00705 0.56 +1.1
133,947 + HUW76_00705 0.58 -0.1
133,947 + HUW76_00705 0.58 -0.6
133,947 + HUW76_00705 0.58 -0.2
133,947 + HUW76_00705 0.58 -0.4
133,947 + HUW76_00705 0.58 -0.3
133,947 + HUW76_00705 0.58 +0.8
133,947 + HUW76_00705 0.58 +1.6
133,947 + HUW76_00705 0.58 +0.3
133,947 + HUW76_00705 0.58 +0.8
133,947 + HUW76_00705 0.58 -0.5
133,947 + HUW76_00705 0.58 -0.1
133,947 + HUW76_00705 0.58 -0.3
133,955 - HUW76_00705 0.59 +1.7
133,955 - HUW76_00705 0.59 +0.4
133,955 - HUW76_00705 0.59 -0.1
133,955 - HUW76_00705 0.59 +1.0
133,991 - HUW76_00705 0.63 -0.1
134,033 + HUW76_00705 0.69 +1.0
134,050 - HUW76_00705 0.71 -1.3
134,050 - HUW76_00705 0.71 +1.1
134,066 - HUW76_00705 0.73 -0.7
134,066 - HUW76_00705 0.73 -2.3
134,066 - HUW76_00705 0.73 +1.2
134,079 - HUW76_00705 0.74 +1.1
134,079 - HUW76_00705 0.74 -1.4
134,098 + HUW76_00705 0.77 +0.9
134,104 + HUW76_00705 0.78 -1.1
134,104 + HUW76_00705 0.78 +0.7
134,139 + HUW76_00705 0.82 +0.5
134,139 + HUW76_00705 0.82 -0.0
134,139 + HUW76_00705 0.82 -2.7
134,139 + HUW76_00705 0.82 -0.6
134,147 + HUW76_00705 0.83 -2.4
134,147 - HUW76_00705 0.83 +0.6
134,147 - HUW76_00705 0.83 +1.9
134,147 - HUW76_00705 0.83 +1.2
134,158 + HUW76_00705 0.84 -0.1
134,158 + HUW76_00705 0.84 -0.1
134,166 - HUW76_00705 0.85 -1.3
134,166 - HUW76_00705 0.85 +1.9
134,198 - HUW76_00705 0.89 -0.1
134,219 - +0.2
134,222 - +0.5
134,222 - -0.4
134,443 - -1.2
134,457 - -0.3
134,466 - HUW76_00710 0.10 +0.4
134,466 - HUW76_00710 0.10 -0.2
134,466 - HUW76_00710 0.10 -0.7
134,491 + HUW76_00710 0.13 +2.6
134,491 + HUW76_00710 0.13 +1.1
134,512 - HUW76_00710 0.16 -0.2
134,512 - HUW76_00710 0.16 +1.4
134,543 - HUW76_00710 0.19 -1.9
134,549 - HUW76_00710 0.20 +1.9
134,549 - HUW76_00710 0.20 -0.6
134,574 - HUW76_00710 0.23 +0.0
134,613 - HUW76_00710 0.27 -0.1
134,671 - HUW76_00710 0.34 -0.8
134,812 - HUW76_00710 0.51 -0.5
134,817 + HUW76_00710 0.51 -0.8
134,817 + HUW76_00710 0.51 -1.1
134,817 - HUW76_00710 0.51 -0.6
134,834 - HUW76_00710 0.53 +1.0
134,942 + HUW76_00710 0.66 +0.1
134,942 + HUW76_00710 0.66 +0.6
134,962 - HUW76_00710 0.68 -1.2
134,969 + HUW76_00710 0.69 -0.8
134,972 - HUW76_00710 0.69 +3.4
134,972 - HUW76_00710 0.69 +3.3
134,977 - HUW76_00710 0.70 -0.6
134,977 - HUW76_00710 0.70 +0.5
135,081 + HUW76_00710 0.82 +1.5
135,127 - HUW76_00710 0.88 +0.2
135,127 - HUW76_00710 0.88 +1.8
135,127 - HUW76_00710 0.88 -0.7
135,127 - HUW76_00710 0.88 -1.1
135,129 + HUW76_00710 0.88 +1.1
135,152 - +0.1
135,152 - -1.1
135,166 + -0.4
135,166 + -0.4
135,171 + +0.3
135,171 + -0.3
135,171 + -2.4
135,179 - -0.0
135,179 - -1.1
135,190 - -2.3
135,222 - +0.9
135,309 - +2.8
135,309 - -0.9
135,373 - -0.7
135,373 - +0.0
135,374 + +0.2
135,375 + +2.5
135,375 + -0.5
135,382 - -1.7
135,382 - -0.3
135,383 - +0.1
135,383 - -0.9
135,383 - -0.5
135,383 - +0.9
135,396 - -0.8
135,404 - -0.6
135,404 - -0.2
135,465 + HUW76_00715 0.11 -1.5
135,465 + HUW76_00715 0.11 +0.5
135,473 - HUW76_00715 0.11 -1.4
135,519 + HUW76_00715 0.15 -3.3
135,519 + HUW76_00715 0.15 +0.1
135,519 + HUW76_00715 0.15 -0.3
135,519 + HUW76_00715 0.15 +0.7
135,519 + HUW76_00715 0.15 +1.2
135,519 + HUW76_00715 0.15 +1.0
135,519 + HUW76_00715 0.15 +2.9
135,527 - HUW76_00715 0.16 +1.1
135,527 - HUW76_00715 0.16 -0.9
135,527 - HUW76_00715 0.16 +0.1
135,527 - HUW76_00715 0.16 -0.4
135,527 - HUW76_00715 0.16 +0.7
135,527 - HUW76_00715 0.16 -0.3
135,527 - HUW76_00715 0.16 -1.3
135,583 + HUW76_00715 0.21 +0.1
135,583 + HUW76_00715 0.21 +0.1
135,583 + HUW76_00715 0.21 +1.7
135,591 - HUW76_00715 0.21 +1.2
135,591 - HUW76_00715 0.21 -0.6
135,628 - HUW76_00715 0.24 +0.3
135,663 + HUW76_00715 0.27 +3.5
135,663 + HUW76_00715 0.27 +1.4
135,683 - HUW76_00715 0.29 -0.5
135,683 - HUW76_00715 0.29 +1.3
135,870 + HUW76_00715 0.45 -0.8
135,870 + HUW76_00715 0.45 +0.3
135,882 + HUW76_00715 0.46 +1.9
135,882 + HUW76_00715 0.46 -0.2
135,882 + HUW76_00715 0.46 -2.2
135,890 - HUW76_00715 0.46 -0.3
135,907 - HUW76_00715 0.48 +1.8
135,907 - HUW76_00715 0.48 -1.4
135,943 - HUW76_00715 0.51 -1.4
135,943 - HUW76_00715 0.51 +0.9
135,978 - HUW76_00715 0.54 -0.5
135,984 - HUW76_00715 0.54 -0.8
135,984 - HUW76_00715 0.54 -0.3
136,029 + HUW76_00715 0.58 -0.5
136,029 + HUW76_00715 0.58 +0.8
136,065 - HUW76_00715 0.61 -1.0
136,181 + HUW76_00715 0.71 +0.2
136,181 + HUW76_00715 0.71 -0.2
136,181 + HUW76_00715 0.71 -0.1
136,181 + HUW76_00715 0.71 -0.9
136,202 + HUW76_00715 0.72 -1.7
136,202 + HUW76_00715 0.72 +1.0
136,223 + HUW76_00715 0.74 -0.3
136,223 + HUW76_00715 0.74 +2.0
136,223 + HUW76_00715 0.74 +2.3

Or see this region's nucleotide sequence