Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS16075

Experiment: R2A_PIPES with Nickel (II) chloride 848 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS16070 and LRK53_RS16075 are separated by 173 nucleotidesLRK53_RS16075 and LRK53_RS16080 are separated by 61 nucleotides LRK53_RS16070: LRK53_RS16070 - RNB domain-containing ribonuclease, at 3,529,707 to 3,531,146 _RS16070 LRK53_RS16075: LRK53_RS16075 - GNAT family N-acetyltransferase, at 3,531,320 to 3,531,796 _RS16075 LRK53_RS16080: LRK53_RS16080 - SapC family protein, at 3,531,858 to 3,532,640 _RS16080 Position (kb) 3531 3532Strain fitness (log2 ratio) -2 -1 0 1 2at 3530.668 kb on - strand, within LRK53_RS16070at 3530.668 kb on - strand, within LRK53_RS16070at 3530.668 kb on - strand, within LRK53_RS16070at 3530.782 kb on - strand, within LRK53_RS16070at 3530.782 kb on - strand, within LRK53_RS16070at 3530.782 kb on - strand, within LRK53_RS16070at 3530.800 kb on + strand, within LRK53_RS16070at 3530.800 kb on + strand, within LRK53_RS16070at 3530.800 kb on + strand, within LRK53_RS16070at 3530.800 kb on + strand, within LRK53_RS16070at 3530.801 kb on - strand, within LRK53_RS16070at 3530.801 kb on - strand, within LRK53_RS16070at 3530.801 kb on - strand, within LRK53_RS16070at 3530.801 kb on - strand, within LRK53_RS16070at 3530.801 kb on - strand, within LRK53_RS16070at 3530.801 kb on - strand, within LRK53_RS16070at 3530.801 kb on - strand, within LRK53_RS16070at 3530.801 kb on - strand, within LRK53_RS16070at 3530.881 kb on + strand, within LRK53_RS16070at 3530.881 kb on + strand, within LRK53_RS16070at 3530.882 kb on - strand, within LRK53_RS16070at 3530.882 kb on - strand, within LRK53_RS16070at 3530.882 kb on - strand, within LRK53_RS16070at 3530.882 kb on - strand, within LRK53_RS16070at 3531.214 kb on + strandat 3531.214 kb on + strandat 3531.215 kb on - strandat 3531.215 kb on - strandat 3531.216 kb on + strandat 3531.216 kb on + strandat 3531.216 kb on + strandat 3531.216 kb on + strandat 3531.216 kb on + strandat 3531.217 kb on - strandat 3531.217 kb on - strandat 3531.217 kb on - strandat 3531.217 kb on - strandat 3531.217 kb on - strandat 3531.217 kb on - strandat 3531.281 kb on + strandat 3531.281 kb on + strandat 3531.281 kb on + strandat 3531.281 kb on + strandat 3531.281 kb on + strandat 3531.497 kb on + strand, within LRK53_RS16075at 3531.497 kb on + strand, within LRK53_RS16075at 3531.497 kb on + strand, within LRK53_RS16075at 3531.497 kb on + strand, within LRK53_RS16075at 3531.497 kb on + strand, within LRK53_RS16075at 3531.497 kb on + strand, within LRK53_RS16075at 3531.497 kb on + strand, within LRK53_RS16075at 3531.497 kb on + strand, within LRK53_RS16075at 3531.497 kb on + strand, within LRK53_RS16075at 3531.497 kb on + strand, within LRK53_RS16075at 3531.497 kb on + strand, within LRK53_RS16075at 3531.497 kb on + strand, within LRK53_RS16075at 3531.498 kb on - strand, within LRK53_RS16075at 3531.498 kb on - strand, within LRK53_RS16075at 3531.498 kb on - strand, within LRK53_RS16075at 3531.498 kb on - strand, within LRK53_RS16075at 3531.498 kb on - strand, within LRK53_RS16075at 3531.498 kb on - strand, within LRK53_RS16075at 3531.498 kb on - strand, within LRK53_RS16075at 3531.498 kb on - strand, within LRK53_RS16075at 3531.498 kb on - strand, within LRK53_RS16075at 3531.498 kb on - strand, within LRK53_RS16075at 3531.498 kb on - strand, within LRK53_RS16075at 3531.571 kb on + strand, within LRK53_RS16075at 3531.620 kb on + strand, within LRK53_RS16075at 3531.620 kb on + strand, within LRK53_RS16075at 3531.740 kb on + strand, within LRK53_RS16075at 3531.740 kb on + strand, within LRK53_RS16075at 3531.740 kb on + strand, within LRK53_RS16075at 3531.741 kb on - strand, within LRK53_RS16075at 3531.741 kb on - strand, within LRK53_RS16075at 3531.741 kb on - strand, within LRK53_RS16075at 3531.741 kb on - strand, within LRK53_RS16075at 3531.755 kb on + strandat 3531.955 kb on + strand, within LRK53_RS16080at 3531.955 kb on + strand, within LRK53_RS16080at 3531.955 kb on + strand, within LRK53_RS16080at 3531.955 kb on + strand, within LRK53_RS16080at 3531.955 kb on + strand, within LRK53_RS16080at 3531.955 kb on + strand, within LRK53_RS16080at 3531.955 kb on + strand, within LRK53_RS16080at 3531.955 kb on + strand, within LRK53_RS16080at 3531.955 kb on + strand, within LRK53_RS16080at 3531.955 kb on + strand, within LRK53_RS16080at 3531.955 kb on + strand, within LRK53_RS16080at 3531.955 kb on + strand, within LRK53_RS16080at 3531.955 kb on + strand, within LRK53_RS16080at 3531.955 kb on + strand, within LRK53_RS16080at 3531.955 kb on + strand, within LRK53_RS16080at 3531.955 kb on + strand, within LRK53_RS16080at 3531.955 kb on + strand, within LRK53_RS16080at 3531.955 kb on + strand, within LRK53_RS16080at 3531.956 kb on - strand, within LRK53_RS16080at 3531.956 kb on - strand, within LRK53_RS16080at 3531.956 kb on - strand, within LRK53_RS16080at 3531.956 kb on - strand, within LRK53_RS16080at 3531.956 kb on - strand, within LRK53_RS16080at 3531.956 kb on - strand, within LRK53_RS16080at 3531.956 kb on - strand, within LRK53_RS16080at 3531.956 kb on - strand, within LRK53_RS16080at 3531.956 kb on - strand, within LRK53_RS16080at 3531.956 kb on - strand, within LRK53_RS16080at 3531.956 kb on - strand, within LRK53_RS16080at 3531.956 kb on - strand, within LRK53_RS16080at 3531.956 kb on - strand, within LRK53_RS16080at 3531.956 kb on - strand, within LRK53_RS16080at 3532.273 kb on + strand, within LRK53_RS16080at 3532.273 kb on + strand, within LRK53_RS16080at 3532.273 kb on + strand, within LRK53_RS16080at 3532.369 kb on + strand, within LRK53_RS16080at 3532.369 kb on + strand, within LRK53_RS16080at 3532.369 kb on + strand, within LRK53_RS16080at 3532.369 kb on + strand, within LRK53_RS16080at 3532.369 kb on + strand, within LRK53_RS16080at 3532.369 kb on + strand, within LRK53_RS16080at 3532.369 kb on + strand, within LRK53_RS16080at 3532.369 kb on + strand, within LRK53_RS16080at 3532.369 kb on + strand, within LRK53_RS16080at 3532.369 kb on + strand, within LRK53_RS16080at 3532.369 kb on + strand, within LRK53_RS16080at 3532.369 kb on + strand, within LRK53_RS16080at 3532.369 kb on + strand, within LRK53_RS16080at 3532.369 kb on + strand, within LRK53_RS16080at 3532.369 kb on + strand, within LRK53_RS16080at 3532.369 kb on + strand, within LRK53_RS16080at 3532.369 kb on + strand, within LRK53_RS16080at 3532.369 kb on + strand, within LRK53_RS16080at 3532.369 kb on + strand, within LRK53_RS16080at 3532.369 kb on + strand, within LRK53_RS16080at 3532.369 kb on + strand, within LRK53_RS16080at 3532.369 kb on + strand, within LRK53_RS16080at 3532.369 kb on + strand, within LRK53_RS16080at 3532.369 kb on + strand, within LRK53_RS16080at 3532.369 kb on + strand, within LRK53_RS16080at 3532.369 kb on + strand, within LRK53_RS16080at 3532.369 kb on + strand, within LRK53_RS16080at 3532.369 kb on + strand, within LRK53_RS16080at 3532.369 kb on + strand, within LRK53_RS16080at 3532.369 kb on + strand, within LRK53_RS16080at 3532.369 kb on + strand, within LRK53_RS16080at 3532.369 kb on + strand, within LRK53_RS16080at 3532.370 kb on - strand, within LRK53_RS16080at 3532.370 kb on - strand, within LRK53_RS16080at 3532.370 kb on - strand, within LRK53_RS16080at 3532.370 kb on - strand, within LRK53_RS16080at 3532.370 kb on - strand, within LRK53_RS16080at 3532.370 kb on - strand, within LRK53_RS16080at 3532.370 kb on - strand, within LRK53_RS16080at 3532.370 kb on - strand, within LRK53_RS16080at 3532.370 kb on - strand, within LRK53_RS16080at 3532.370 kb on - strand, within LRK53_RS16080at 3532.370 kb on - strand, within LRK53_RS16080at 3532.370 kb on - strand, within LRK53_RS16080at 3532.370 kb on - strand, within LRK53_RS16080at 3532.370 kb on - strand, within LRK53_RS16080at 3532.370 kb on - strand, within LRK53_RS16080at 3532.370 kb on - strand, within LRK53_RS16080at 3532.370 kb on - strand, within LRK53_RS16080at 3532.370 kb on - strand, within LRK53_RS16080at 3532.370 kb on - strand, within LRK53_RS16080at 3532.370 kb on - strand, within LRK53_RS16080at 3532.370 kb on - strand, within LRK53_RS16080at 3532.370 kb on - strand, within LRK53_RS16080at 3532.370 kb on - strand, within LRK53_RS16080at 3532.370 kb on - strand, within LRK53_RS16080at 3532.370 kb on - strand, within LRK53_RS16080at 3532.370 kb on - strand, within LRK53_RS16080at 3532.370 kb on - strand, within LRK53_RS16080at 3532.370 kb on - strand, within LRK53_RS16080at 3532.370 kb on - strand, within LRK53_RS16080at 3532.370 kb on - strand, within LRK53_RS16080at 3532.370 kb on - strand, within LRK53_RS16080at 3532.370 kb on - strand, within LRK53_RS16080at 3532.370 kb on - strand, within LRK53_RS16080at 3532.370 kb on - strand, within LRK53_RS16080at 3532.370 kb on - strand, within LRK53_RS16080at 3532.370 kb on - strand, within LRK53_RS16080at 3532.370 kb on - strand, within LRK53_RS16080at 3532.370 kb on - strand, within LRK53_RS16080at 3532.370 kb on - strand, within LRK53_RS16080at 3532.370 kb on - strand, within LRK53_RS16080at 3532.370 kb on - strand, within LRK53_RS16080at 3532.370 kb on - strand, within LRK53_RS16080at 3532.405 kb on + strand, within LRK53_RS16080at 3532.405 kb on + strand, within LRK53_RS16080at 3532.405 kb on + strand, within LRK53_RS16080at 3532.406 kb on - strand, within LRK53_RS16080at 3532.406 kb on - strand, within LRK53_RS16080at 3532.406 kb on - strand, within LRK53_RS16080at 3532.406 kb on - strand, within LRK53_RS16080at 3532.406 kb on - strand, within LRK53_RS16080at 3532.621 kb on + strandat 3532.622 kb on - strandat 3532.622 kb on - strandat 3532.622 kb on - strandat 3532.727 kb on + strandat 3532.727 kb on + strandat 3532.727 kb on + strandat 3532.727 kb on + strandat 3532.727 kb on + strandat 3532.728 kb on - strandat 3532.728 kb on - strandat 3532.728 kb on - strandat 3532.728 kb on - strandat 3532.728 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Nickel (II) chloride 848 uM
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3,530,668 - LRK53_RS16070 0.67 +0.3
3,530,668 - LRK53_RS16070 0.67 +0.3
3,530,668 - LRK53_RS16070 0.67 -0.6
3,530,782 - LRK53_RS16070 0.75 +0.6
3,530,782 - LRK53_RS16070 0.75 +0.6
3,530,782 - LRK53_RS16070 0.75 +0.3
3,530,800 + LRK53_RS16070 0.76 -1.3
3,530,800 + LRK53_RS16070 0.76 -0.3
3,530,800 + LRK53_RS16070 0.76 -0.1
3,530,800 + LRK53_RS16070 0.76 -1.8
3,530,801 - LRK53_RS16070 0.76 -1.1
3,530,801 - LRK53_RS16070 0.76 -0.2
3,530,801 - LRK53_RS16070 0.76 -0.1
3,530,801 - LRK53_RS16070 0.76 -0.3
3,530,801 - LRK53_RS16070 0.76 +2.6
3,530,801 - LRK53_RS16070 0.76 -0.6
3,530,801 - LRK53_RS16070 0.76 -0.9
3,530,801 - LRK53_RS16070 0.76 +0.8
3,530,881 + LRK53_RS16070 0.82 -2.1
3,530,881 + LRK53_RS16070 0.82 +0.0
3,530,882 - LRK53_RS16070 0.82 +1.0
3,530,882 - LRK53_RS16070 0.82 +0.4
3,530,882 - LRK53_RS16070 0.82 -1.5
3,530,882 - LRK53_RS16070 0.82 +0.2
3,531,214 + -1.0
3,531,214 + -0.6
3,531,215 - -0.7
3,531,215 - -2.3
3,531,216 + -0.3
3,531,216 + -2.4
3,531,216 + +0.0
3,531,216 + -1.0
3,531,216 + -0.6
3,531,217 - +0.8
3,531,217 - -1.8
3,531,217 - +0.0
3,531,217 - -1.3
3,531,217 - -2.1
3,531,217 - -1.0
3,531,281 + -2.3
3,531,281 + -1.0
3,531,281 + -0.5
3,531,281 + +0.4
3,531,281 + -0.6
3,531,497 + LRK53_RS16075 0.37 +0.8
3,531,497 + LRK53_RS16075 0.37 -0.5
3,531,497 + LRK53_RS16075 0.37 +0.1
3,531,497 + LRK53_RS16075 0.37 +1.0
3,531,497 + LRK53_RS16075 0.37 +0.4
3,531,497 + LRK53_RS16075 0.37 -1.0
3,531,497 + LRK53_RS16075 0.37 +1.0
3,531,497 + LRK53_RS16075 0.37 +2.0
3,531,497 + LRK53_RS16075 0.37 -0.6
3,531,497 + LRK53_RS16075 0.37 -1.0
3,531,497 + LRK53_RS16075 0.37 -0.6
3,531,497 + LRK53_RS16075 0.37 -0.1
3,531,498 - LRK53_RS16075 0.37 +0.0
3,531,498 - LRK53_RS16075 0.37 +0.6
3,531,498 - LRK53_RS16075 0.37 +1.0
3,531,498 - LRK53_RS16075 0.37 +1.0
3,531,498 - LRK53_RS16075 0.37 +0.0
3,531,498 - LRK53_RS16075 0.37 +0.0
3,531,498 - LRK53_RS16075 0.37 +1.6
3,531,498 - LRK53_RS16075 0.37 -0.6
3,531,498 - LRK53_RS16075 0.37 -0.6
3,531,498 - LRK53_RS16075 0.37 +0.0
3,531,498 - LRK53_RS16075 0.37 +1.0
3,531,571 + LRK53_RS16075 0.53 -1.6
3,531,620 + LRK53_RS16075 0.63 +0.6
3,531,620 + LRK53_RS16075 0.63 +0.0
3,531,740 + LRK53_RS16075 0.88 +1.0
3,531,740 + LRK53_RS16075 0.88 -0.9
3,531,740 + LRK53_RS16075 0.88 -0.4
3,531,741 - LRK53_RS16075 0.88 -1.1
3,531,741 - LRK53_RS16075 0.88 +1.0
3,531,741 - LRK53_RS16075 0.88 -0.3
3,531,741 - LRK53_RS16075 0.88 -1.6
3,531,755 + -1.3
3,531,955 + LRK53_RS16080 0.12 -1.8
3,531,955 + LRK53_RS16080 0.12 -0.4
3,531,955 + LRK53_RS16080 0.12 -0.8
3,531,955 + LRK53_RS16080 0.12 +1.2
3,531,955 + LRK53_RS16080 0.12 -1.0
3,531,955 + LRK53_RS16080 0.12 -0.2
3,531,955 + LRK53_RS16080 0.12 -1.5
3,531,955 + LRK53_RS16080 0.12 -1.2
3,531,955 + LRK53_RS16080 0.12 -0.4
3,531,955 + LRK53_RS16080 0.12 +0.5
3,531,955 + LRK53_RS16080 0.12 -0.5
3,531,955 + LRK53_RS16080 0.12 +0.0
3,531,955 + LRK53_RS16080 0.12 +0.3
3,531,955 + LRK53_RS16080 0.12 +0.4
3,531,955 + LRK53_RS16080 0.12 +2.0
3,531,955 + LRK53_RS16080 0.12 -1.0
3,531,955 + LRK53_RS16080 0.12 -0.7
3,531,955 + LRK53_RS16080 0.12 +0.0
3,531,956 - LRK53_RS16080 0.13 +0.5
3,531,956 - LRK53_RS16080 0.13 +1.0
3,531,956 - LRK53_RS16080 0.13 +0.0
3,531,956 - LRK53_RS16080 0.13 -2.0
3,531,956 - LRK53_RS16080 0.13 -1.5
3,531,956 - LRK53_RS16080 0.13 -1.8
3,531,956 - LRK53_RS16080 0.13 -1.0
3,531,956 - LRK53_RS16080 0.13 +0.5
3,531,956 - LRK53_RS16080 0.13 +0.0
3,531,956 - LRK53_RS16080 0.13 -0.5
3,531,956 - LRK53_RS16080 0.13 -1.0
3,531,956 - LRK53_RS16080 0.13 +0.2
3,531,956 - LRK53_RS16080 0.13 -0.5
3,531,956 - LRK53_RS16080 0.13 -1.3
3,532,273 + LRK53_RS16080 0.53 -1.1
3,532,273 + LRK53_RS16080 0.53 +1.0
3,532,273 + LRK53_RS16080 0.53 -1.0
3,532,369 + LRK53_RS16080 0.65 +0.0
3,532,369 + LRK53_RS16080 0.65 -0.1
3,532,369 + LRK53_RS16080 0.65 -1.2
3,532,369 + LRK53_RS16080 0.65 +0.0
3,532,369 + LRK53_RS16080 0.65 +0.8
3,532,369 + LRK53_RS16080 0.65 +1.0
3,532,369 + LRK53_RS16080 0.65 -2.0
3,532,369 + LRK53_RS16080 0.65 -0.1
3,532,369 + LRK53_RS16080 0.65 +0.0
3,532,369 + LRK53_RS16080 0.65 -1.0
3,532,369 + LRK53_RS16080 0.65 +2.0
3,532,369 + LRK53_RS16080 0.65 -1.1
3,532,369 + LRK53_RS16080 0.65 +0.2
3,532,369 + LRK53_RS16080 0.65 +0.3
3,532,369 + LRK53_RS16080 0.65 +0.0
3,532,369 + LRK53_RS16080 0.65 -0.4
3,532,369 + LRK53_RS16080 0.65 +0.3
3,532,369 + LRK53_RS16080 0.65 -0.2
3,532,369 + LRK53_RS16080 0.65 -1.8
3,532,369 + LRK53_RS16080 0.65 -2.7
3,532,369 + LRK53_RS16080 0.65 -0.4
3,532,369 + LRK53_RS16080 0.65 +1.0
3,532,369 + LRK53_RS16080 0.65 +0.0
3,532,369 + LRK53_RS16080 0.65 +0.0
3,532,369 + LRK53_RS16080 0.65 -1.3
3,532,369 + LRK53_RS16080 0.65 +1.0
3,532,369 + LRK53_RS16080 0.65 -0.6
3,532,369 + LRK53_RS16080 0.65 +2.6
3,532,369 + LRK53_RS16080 0.65 +0.0
3,532,369 + LRK53_RS16080 0.65 -0.9
3,532,369 + LRK53_RS16080 0.65 +0.6
3,532,369 + LRK53_RS16080 0.65 -1.5
3,532,370 - LRK53_RS16080 0.65 -0.7
3,532,370 - LRK53_RS16080 0.65 -0.1
3,532,370 - LRK53_RS16080 0.65 -0.5
3,532,370 - LRK53_RS16080 0.65 +0.0
3,532,370 - LRK53_RS16080 0.65 +0.5
3,532,370 - LRK53_RS16080 0.65 -0.0
3,532,370 - LRK53_RS16080 0.65 +0.5
3,532,370 - LRK53_RS16080 0.65 +0.0
3,532,370 - LRK53_RS16080 0.65 +0.0
3,532,370 - LRK53_RS16080 0.65 -0.8
3,532,370 - LRK53_RS16080 0.65 +1.0
3,532,370 - LRK53_RS16080 0.65 -0.6
3,532,370 - LRK53_RS16080 0.65 +1.2
3,532,370 - LRK53_RS16080 0.65 +0.0
3,532,370 - LRK53_RS16080 0.65 +1.0
3,532,370 - LRK53_RS16080 0.65 -1.4
3,532,370 - LRK53_RS16080 0.65 +1.0
3,532,370 - LRK53_RS16080 0.65 +0.5
3,532,370 - LRK53_RS16080 0.65 +2.0
3,532,370 - LRK53_RS16080 0.65 -0.5
3,532,370 - LRK53_RS16080 0.65 -0.7
3,532,370 - LRK53_RS16080 0.65 -0.4
3,532,370 - LRK53_RS16080 0.65 -1.0
3,532,370 - LRK53_RS16080 0.65 -1.1
3,532,370 - LRK53_RS16080 0.65 -0.5
3,532,370 - LRK53_RS16080 0.65 -2.0
3,532,370 - LRK53_RS16080 0.65 +0.2
3,532,370 - LRK53_RS16080 0.65 -0.5
3,532,370 - LRK53_RS16080 0.65 -0.5
3,532,370 - LRK53_RS16080 0.65 -0.5
3,532,370 - LRK53_RS16080 0.65 -0.5
3,532,370 - LRK53_RS16080 0.65 -1.2
3,532,370 - LRK53_RS16080 0.65 -0.1
3,532,370 - LRK53_RS16080 0.65 -0.7
3,532,370 - LRK53_RS16080 0.65 +0.0
3,532,370 - LRK53_RS16080 0.65 -0.7
3,532,370 - LRK53_RS16080 0.65 +0.4
3,532,370 - LRK53_RS16080 0.65 +0.1
3,532,370 - LRK53_RS16080 0.65 +1.0
3,532,370 - LRK53_RS16080 0.65 +0.0
3,532,370 - LRK53_RS16080 0.65 -0.3
3,532,370 - LRK53_RS16080 0.65 +1.0
3,532,405 + LRK53_RS16080 0.70 -0.3
3,532,405 + LRK53_RS16080 0.70 +2.0
3,532,405 + LRK53_RS16080 0.70 -0.8
3,532,406 - LRK53_RS16080 0.70 -0.1
3,532,406 - LRK53_RS16080 0.70 +0.5
3,532,406 - LRK53_RS16080 0.70 +1.0
3,532,406 - LRK53_RS16080 0.70 +2.0
3,532,406 - LRK53_RS16080 0.70 -0.2
3,532,621 + +0.5
3,532,622 - +0.0
3,532,622 - +0.0
3,532,622 - -0.8
3,532,727 + +0.0
3,532,727 + +1.4
3,532,727 + -0.7
3,532,727 + -0.5
3,532,727 + +0.7
3,532,728 - -1.2
3,532,728 - -1.3
3,532,728 - -0.4
3,532,728 - -0.5
3,532,728 - +0.0

Or see this region's nucleotide sequence