Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS03380

Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS03375 and LRK53_RS03380 are separated by 212 nucleotidesLRK53_RS03380 and LRK53_RS03385 are separated by 123 nucleotides LRK53_RS03375: LRK53_RS03375 - isocitrate lyase, at 799,396 to 800,694 _RS03375 LRK53_RS03380: LRK53_RS03380 - malate synthase A, at 800,907 to 802,499 _RS03380 LRK53_RS03385: LRK53_RS03385 - LysR family transcriptional regulator, at 802,623 to 803,657 _RS03385 Position (kb) 800 801 802 803Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 800.363 kb on + strand, within LRK53_RS03375at 800.381 kb on + strand, within LRK53_RS03375at 800.381 kb on + strand, within LRK53_RS03375at 800.381 kb on + strand, within LRK53_RS03375at 800.381 kb on + strand, within LRK53_RS03375at 800.381 kb on + strand, within LRK53_RS03375at 800.381 kb on + strand, within LRK53_RS03375at 800.381 kb on + strand, within LRK53_RS03375at 800.381 kb on + strand, within LRK53_RS03375at 800.381 kb on + strand, within LRK53_RS03375at 800.381 kb on + strand, within LRK53_RS03375at 800.382 kb on - strand, within LRK53_RS03375at 800.382 kb on - strand, within LRK53_RS03375at 800.382 kb on - strand, within LRK53_RS03375at 800.382 kb on - strand, within LRK53_RS03375at 800.382 kb on - strand, within LRK53_RS03375at 800.382 kb on - strand, within LRK53_RS03375at 800.382 kb on - strand, within LRK53_RS03375at 800.382 kb on - strand, within LRK53_RS03375at 800.382 kb on - strand, within LRK53_RS03375at 800.432 kb on + strand, within LRK53_RS03375at 800.432 kb on + strand, within LRK53_RS03375at 800.432 kb on + strand, within LRK53_RS03375at 800.432 kb on + strand, within LRK53_RS03375at 800.432 kb on + strand, within LRK53_RS03375at 800.433 kb on - strand, within LRK53_RS03375at 800.433 kb on - strand, within LRK53_RS03375at 800.433 kb on - strand, within LRK53_RS03375at 800.433 kb on - strand, within LRK53_RS03375at 800.433 kb on - strand, within LRK53_RS03375at 800.433 kb on - strand, within LRK53_RS03375at 800.433 kb on - strand, within LRK53_RS03375at 800.433 kb on - strand, within LRK53_RS03375at 800.433 kb on - strand, within LRK53_RS03375at 800.433 kb on - strand, within LRK53_RS03375at 800.433 kb on - strand, within LRK53_RS03375at 800.433 kb on - strand, within LRK53_RS03375at 800.609 kb on + strandat 800.609 kb on + strandat 800.610 kb on - strandat 800.610 kb on - strandat 800.610 kb on - strandat 800.610 kb on - strandat 800.610 kb on - strandat 800.714 kb on + strandat 800.901 kb on + strandat 800.901 kb on + strandat 800.920 kb on + strandat 801.217 kb on + strand, within LRK53_RS03380at 801.349 kb on + strand, within LRK53_RS03380at 801.349 kb on + strand, within LRK53_RS03380at 801.349 kb on + strand, within LRK53_RS03380at 801.349 kb on + strand, within LRK53_RS03380at 801.349 kb on + strand, within LRK53_RS03380at 801.349 kb on + strand, within LRK53_RS03380at 801.349 kb on + strand, within LRK53_RS03380at 801.349 kb on + strand, within LRK53_RS03380at 801.349 kb on + strand, within LRK53_RS03380at 801.349 kb on + strand, within LRK53_RS03380at 801.349 kb on + strand, within LRK53_RS03380at 801.350 kb on - strand, within LRK53_RS03380at 801.350 kb on - strand, within LRK53_RS03380at 801.350 kb on - strand, within LRK53_RS03380at 801.350 kb on - strand, within LRK53_RS03380at 801.350 kb on - strand, within LRK53_RS03380at 801.350 kb on - strand, within LRK53_RS03380at 801.350 kb on - strand, within LRK53_RS03380at 801.350 kb on - strand, within LRK53_RS03380at 801.350 kb on - strand, within LRK53_RS03380at 801.350 kb on - strand, within LRK53_RS03380at 801.350 kb on - strand, within LRK53_RS03380at 801.350 kb on - strand, within LRK53_RS03380at 801.350 kb on - strand, within LRK53_RS03380at 801.350 kb on - strand, within LRK53_RS03380at 801.447 kb on + strand, within LRK53_RS03380at 801.448 kb on - strand, within LRK53_RS03380at 801.565 kb on + strand, within LRK53_RS03380at 801.565 kb on + strand, within LRK53_RS03380at 801.565 kb on + strand, within LRK53_RS03380at 801.565 kb on + strand, within LRK53_RS03380at 801.565 kb on + strand, within LRK53_RS03380at 801.565 kb on + strand, within LRK53_RS03380at 801.565 kb on + strand, within LRK53_RS03380at 801.565 kb on + strand, within LRK53_RS03380at 801.565 kb on + strand, within LRK53_RS03380at 801.565 kb on + strand, within LRK53_RS03380at 801.565 kb on + strand, within LRK53_RS03380at 801.566 kb on - strand, within LRK53_RS03380at 801.566 kb on - strand, within LRK53_RS03380at 801.649 kb on + strand, within LRK53_RS03380at 801.661 kb on + strand, within LRK53_RS03380at 801.661 kb on + strand, within LRK53_RS03380at 801.661 kb on + strand, within LRK53_RS03380at 801.661 kb on + strand, within LRK53_RS03380at 801.661 kb on + strand, within LRK53_RS03380at 801.661 kb on + strand, within LRK53_RS03380at 801.661 kb on + strand, within LRK53_RS03380at 801.661 kb on + strand, within LRK53_RS03380at 801.661 kb on + strand, within LRK53_RS03380at 801.661 kb on + strand, within LRK53_RS03380at 801.661 kb on + strand, within LRK53_RS03380at 801.661 kb on + strand, within LRK53_RS03380at 801.662 kb on - strand, within LRK53_RS03380at 801.662 kb on - strand, within LRK53_RS03380at 801.662 kb on - strand, within LRK53_RS03380at 801.662 kb on - strand, within LRK53_RS03380at 801.662 kb on - strand, within LRK53_RS03380at 801.662 kb on - strand, within LRK53_RS03380at 801.662 kb on - strand, within LRK53_RS03380at 801.662 kb on - strand, within LRK53_RS03380at 801.662 kb on - strand, within LRK53_RS03380at 801.862 kb on + strand, within LRK53_RS03380at 801.863 kb on - strand, within LRK53_RS03380at 801.868 kb on + strand, within LRK53_RS03380at 801.868 kb on + strand, within LRK53_RS03380at 801.868 kb on + strand, within LRK53_RS03380at 801.868 kb on + strand, within LRK53_RS03380at 801.868 kb on + strand, within LRK53_RS03380at 801.869 kb on - strand, within LRK53_RS03380at 802.036 kb on + strand, within LRK53_RS03380at 802.036 kb on + strand, within LRK53_RS03380at 802.214 kb on + strand, within LRK53_RS03380at 802.436 kb on - strandat 802.580 kb on - strandat 802.663 kb on + strandat 802.664 kb on - strandat 802.722 kb on + strandat 802.722 kb on + strandat 802.722 kb on + strandat 802.722 kb on + strandat 802.723 kb on - strandat 802.723 kb on - strandat 802.725 kb on + strandat 802.725 kb on + strandat 802.725 kb on + strandat 802.725 kb on + strandat 802.725 kb on + strandat 802.725 kb on + strandat 802.725 kb on + strandat 802.725 kb on + strandat 802.725 kb on + strandat 802.726 kb on - strandat 802.726 kb on - strandat 802.726 kb on - strandat 802.726 kb on - strandat 802.726 kb on - strandat 802.726 kb on - strandat 802.726 kb on - strandat 802.726 kb on - strandat 802.726 kb on - strandat 802.726 kb on - strandat 802.726 kb on - strandat 802.926 kb on + strand, within LRK53_RS03385at 802.926 kb on + strand, within LRK53_RS03385at 802.926 kb on + strand, within LRK53_RS03385at 802.926 kb on + strand, within LRK53_RS03385at 802.927 kb on - strand, within LRK53_RS03385at 803.046 kb on + strand, within LRK53_RS03385at 803.046 kb on + strand, within LRK53_RS03385at 803.046 kb on + strand, within LRK53_RS03385at 803.046 kb on + strand, within LRK53_RS03385at 803.046 kb on + strand, within LRK53_RS03385at 803.046 kb on + strand, within LRK53_RS03385at 803.046 kb on + strand, within LRK53_RS03385at 803.046 kb on + strand, within LRK53_RS03385at 803.047 kb on - strand, within LRK53_RS03385at 803.047 kb on - strand, within LRK53_RS03385at 803.047 kb on - strand, within LRK53_RS03385at 803.047 kb on - strand, within LRK53_RS03385at 803.047 kb on - strand, within LRK53_RS03385at 803.047 kb on - strand, within LRK53_RS03385at 803.065 kb on + strand, within LRK53_RS03385at 803.065 kb on + strand, within LRK53_RS03385at 803.065 kb on + strand, within LRK53_RS03385at 803.065 kb on + strand, within LRK53_RS03385at 803.223 kb on + strand, within LRK53_RS03385at 803.223 kb on + strand, within LRK53_RS03385at 803.223 kb on + strand, within LRK53_RS03385at 803.223 kb on + strand, within LRK53_RS03385at 803.223 kb on + strand, within LRK53_RS03385at 803.224 kb on - strand, within LRK53_RS03385at 803.224 kb on - strand, within LRK53_RS03385at 803.224 kb on - strand, within LRK53_RS03385at 803.224 kb on - strand, within LRK53_RS03385at 803.224 kb on - strand, within LRK53_RS03385at 803.301 kb on + strand, within LRK53_RS03385at 803.337 kb on + strand, within LRK53_RS03385at 803.337 kb on + strand, within LRK53_RS03385at 803.337 kb on + strand, within LRK53_RS03385at 803.338 kb on - strand, within LRK53_RS03385at 803.380 kb on - strand, within LRK53_RS03385at 803.380 kb on - strand, within LRK53_RS03385at 803.424 kb on + strand, within LRK53_RS03385at 803.424 kb on + strand, within LRK53_RS03385at 803.424 kb on + strand, within LRK53_RS03385at 803.424 kb on + strand, within LRK53_RS03385at 803.424 kb on + strand, within LRK53_RS03385at 803.424 kb on + strand, within LRK53_RS03385at 803.424 kb on + strand, within LRK53_RS03385at 803.424 kb on + strand, within LRK53_RS03385at 803.424 kb on + strand, within LRK53_RS03385at 803.424 kb on + strand, within LRK53_RS03385at 803.424 kb on + strand, within LRK53_RS03385at 803.425 kb on - strand, within LRK53_RS03385at 803.425 kb on - strand, within LRK53_RS03385at 803.425 kb on - strand, within LRK53_RS03385at 803.425 kb on - strand, within LRK53_RS03385at 803.425 kb on - strand, within LRK53_RS03385at 803.425 kb on - strand, within LRK53_RS03385at 803.425 kb on - strand, within LRK53_RS03385at 803.425 kb on - strand, within LRK53_RS03385at 803.425 kb on - strand, within LRK53_RS03385at 803.425 kb on - strand, within LRK53_RS03385at 803.425 kb on - strand, within LRK53_RS03385at 803.425 kb on - strand, within LRK53_RS03385at 803.425 kb on - strand, within LRK53_RS03385

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Manganese (II) chloride tetrahydrate 5 mM
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800,363 + LRK53_RS03375 0.74 -0.6
800,381 + LRK53_RS03375 0.76 +0.4
800,381 + LRK53_RS03375 0.76 -0.1
800,381 + LRK53_RS03375 0.76 -1.9
800,381 + LRK53_RS03375 0.76 +0.4
800,381 + LRK53_RS03375 0.76 -0.6
800,381 + LRK53_RS03375 0.76 -0.1
800,381 + LRK53_RS03375 0.76 -2.4
800,381 + LRK53_RS03375 0.76 -0.5
800,381 + LRK53_RS03375 0.76 -2.6
800,381 + LRK53_RS03375 0.76 -2.9
800,382 - LRK53_RS03375 0.76 -1.7
800,382 - LRK53_RS03375 0.76 +0.4
800,382 - LRK53_RS03375 0.76 -1.0
800,382 - LRK53_RS03375 0.76 -0.2
800,382 - LRK53_RS03375 0.76 -0.1
800,382 - LRK53_RS03375 0.76 -1.1
800,382 - LRK53_RS03375 0.76 -1.6
800,382 - LRK53_RS03375 0.76 -0.6
800,382 - LRK53_RS03375 0.76 +0.9
800,432 + LRK53_RS03375 0.80 -0.5
800,432 + LRK53_RS03375 0.80 -1.1
800,432 + LRK53_RS03375 0.80 -1.9
800,432 + LRK53_RS03375 0.80 +0.4
800,432 + LRK53_RS03375 0.80 -1.9
800,433 - LRK53_RS03375 0.80 -0.2
800,433 - LRK53_RS03375 0.80 +1.9
800,433 - LRK53_RS03375 0.80 -1.2
800,433 - LRK53_RS03375 0.80 -1.3
800,433 - LRK53_RS03375 0.80 -0.4
800,433 - LRK53_RS03375 0.80 -2.8
800,433 - LRK53_RS03375 0.80 +0.9
800,433 - LRK53_RS03375 0.80 +0.2
800,433 - LRK53_RS03375 0.80 -0.1
800,433 - LRK53_RS03375 0.80 -0.1
800,433 - LRK53_RS03375 0.80 -0.1
800,433 - LRK53_RS03375 0.80 +0.9
800,609 + +1.4
800,609 + +0.4
800,610 - -1.1
800,610 - +1.5
800,610 - +0.9
800,610 - +0.4
800,610 - -1.2
800,714 + -1.4
800,901 + -0.1
800,901 + -1.6
800,920 + -1.4
801,217 + LRK53_RS03380 0.19 -1.6
801,349 + LRK53_RS03380 0.28 -0.8
801,349 + LRK53_RS03380 0.28 +1.9
801,349 + LRK53_RS03380 0.28 -1.1
801,349 + LRK53_RS03380 0.28 -1.4
801,349 + LRK53_RS03380 0.28 -1.5
801,349 + LRK53_RS03380 0.28 -1.1
801,349 + LRK53_RS03380 0.28 -0.6
801,349 + LRK53_RS03380 0.28 -1.2
801,349 + LRK53_RS03380 0.28 -0.1
801,349 + LRK53_RS03380 0.28 -1.6
801,349 + LRK53_RS03380 0.28 -0.6
801,350 - LRK53_RS03380 0.28 -1.1
801,350 - LRK53_RS03380 0.28 -1.5
801,350 - LRK53_RS03380 0.28 -0.1
801,350 - LRK53_RS03380 0.28 +0.9
801,350 - LRK53_RS03380 0.28 +0.9
801,350 - LRK53_RS03380 0.28 +0.2
801,350 - LRK53_RS03380 0.28 -0.9
801,350 - LRK53_RS03380 0.28 -1.6
801,350 - LRK53_RS03380 0.28 -2.2
801,350 - LRK53_RS03380 0.28 -1.6
801,350 - LRK53_RS03380 0.28 -0.6
801,350 - LRK53_RS03380 0.28 -1.1
801,350 - LRK53_RS03380 0.28 +1.3
801,350 - LRK53_RS03380 0.28 -0.9
801,447 + LRK53_RS03380 0.34 -0.4
801,448 - LRK53_RS03380 0.34 +1.4
801,565 + LRK53_RS03380 0.41 +0.9
801,565 + LRK53_RS03380 0.41 -0.1
801,565 + LRK53_RS03380 0.41 -2.2
801,565 + LRK53_RS03380 0.41 -1.9
801,565 + LRK53_RS03380 0.41 -1.6
801,565 + LRK53_RS03380 0.41 -1.4
801,565 + LRK53_RS03380 0.41 -1.6
801,565 + LRK53_RS03380 0.41 -0.6
801,565 + LRK53_RS03380 0.41 -0.6
801,565 + LRK53_RS03380 0.41 +1.9
801,565 + LRK53_RS03380 0.41 -1.1
801,566 - LRK53_RS03380 0.41 +0.2
801,566 - LRK53_RS03380 0.41 -0.4
801,649 + LRK53_RS03380 0.47 -1.6
801,661 + LRK53_RS03380 0.47 -0.7
801,661 + LRK53_RS03380 0.47 -0.3
801,661 + LRK53_RS03380 0.47 -0.1
801,661 + LRK53_RS03380 0.47 -1.1
801,661 + LRK53_RS03380 0.47 -2.4
801,661 + LRK53_RS03380 0.47 -1.1
801,661 + LRK53_RS03380 0.47 -0.1
801,661 + LRK53_RS03380 0.47 -1.4
801,661 + LRK53_RS03380 0.47 -1.4
801,661 + LRK53_RS03380 0.47 -0.5
801,661 + LRK53_RS03380 0.47 +0.9
801,661 + LRK53_RS03380 0.47 -0.1
801,662 - LRK53_RS03380 0.47 -0.4
801,662 - LRK53_RS03380 0.47 -1.8
801,662 - LRK53_RS03380 0.47 -1.8
801,662 - LRK53_RS03380 0.47 -0.1
801,662 - LRK53_RS03380 0.47 +0.4
801,662 - LRK53_RS03380 0.47 -0.3
801,662 - LRK53_RS03380 0.47 +0.9
801,662 - LRK53_RS03380 0.47 -0.6
801,662 - LRK53_RS03380 0.47 -0.6
801,862 + LRK53_RS03380 0.60 -0.4
801,863 - LRK53_RS03380 0.60 -0.9
801,868 + LRK53_RS03380 0.60 +0.9
801,868 + LRK53_RS03380 0.60 +0.2
801,868 + LRK53_RS03380 0.60 -1.1
801,868 + LRK53_RS03380 0.60 +0.5
801,868 + LRK53_RS03380 0.60 -1.2
801,869 - LRK53_RS03380 0.60 +0.9
802,036 + LRK53_RS03380 0.71 -1.2
802,036 + LRK53_RS03380 0.71 -1.6
802,214 + LRK53_RS03380 0.82 -0.1
802,436 - +0.1
802,580 - +0.9
802,663 + -0.6
802,664 - -0.6
802,722 + -1.4
802,722 + -0.6
802,722 + +0.4
802,722 + -2.0
802,723 - -0.4
802,723 - -0.9
802,725 + -2.2
802,725 + +0.9
802,725 + +0.9
802,725 + -1.1
802,725 + -0.1
802,725 + -0.7
802,725 + -2.0
802,725 + -0.6
802,725 + -2.2
802,726 - -2.4
802,726 - -2.1
802,726 - -1.3
802,726 - -1.0
802,726 - -1.9
802,726 - -1.1
802,726 - -0.5
802,726 - -0.3
802,726 - -1.1
802,726 - -1.6
802,726 - -1.1
802,926 + LRK53_RS03385 0.29 -0.7
802,926 + LRK53_RS03385 0.29 +0.4
802,926 + LRK53_RS03385 0.29 -1.1
802,926 + LRK53_RS03385 0.29 +0.5
802,927 - LRK53_RS03385 0.29 -0.7
803,046 + LRK53_RS03385 0.41 -1.3
803,046 + LRK53_RS03385 0.41 -0.6
803,046 + LRK53_RS03385 0.41 -0.6
803,046 + LRK53_RS03385 0.41 +0.9
803,046 + LRK53_RS03385 0.41 -1.1
803,046 + LRK53_RS03385 0.41 -0.6
803,046 + LRK53_RS03385 0.41 -0.6
803,046 + LRK53_RS03385 0.41 +0.2
803,047 - LRK53_RS03385 0.41 -1.2
803,047 - LRK53_RS03385 0.41 +0.4
803,047 - LRK53_RS03385 0.41 -1.4
803,047 - LRK53_RS03385 0.41 -1.2
803,047 - LRK53_RS03385 0.41 +0.9
803,047 - LRK53_RS03385 0.41 +0.5
803,065 + LRK53_RS03385 0.43 -0.9
803,065 + LRK53_RS03385 0.43 +0.9
803,065 + LRK53_RS03385 0.43 -1.2
803,065 + LRK53_RS03385 0.43 +0.3
803,223 + LRK53_RS03385 0.58 +0.1
803,223 + LRK53_RS03385 0.58 -0.1
803,223 + LRK53_RS03385 0.58 +0.9
803,223 + LRK53_RS03385 0.58 -1.4
803,223 + LRK53_RS03385 0.58 -0.5
803,224 - LRK53_RS03385 0.58 +0.9
803,224 - LRK53_RS03385 0.58 -1.2
803,224 - LRK53_RS03385 0.58 -0.9
803,224 - LRK53_RS03385 0.58 -0.1
803,224 - LRK53_RS03385 0.58 -0.1
803,301 + LRK53_RS03385 0.66 -1.1
803,337 + LRK53_RS03385 0.69 -0.6
803,337 + LRK53_RS03385 0.69 +0.9
803,337 + LRK53_RS03385 0.69 -1.6
803,338 - LRK53_RS03385 0.69 -1.3
803,380 - LRK53_RS03385 0.73 -0.6
803,380 - LRK53_RS03385 0.73 -1.4
803,424 + LRK53_RS03385 0.77 -1.5
803,424 + LRK53_RS03385 0.77 +0.5
803,424 + LRK53_RS03385 0.77 -0.8
803,424 + LRK53_RS03385 0.77 +0.4
803,424 + LRK53_RS03385 0.77 -1.1
803,424 + LRK53_RS03385 0.77 -0.6
803,424 + LRK53_RS03385 0.77 -1.1
803,424 + LRK53_RS03385 0.77 -0.8
803,424 + LRK53_RS03385 0.77 -0.1
803,424 + LRK53_RS03385 0.77 -0.7
803,424 + LRK53_RS03385 0.77 -2.2
803,425 - LRK53_RS03385 0.77 -0.6
803,425 - LRK53_RS03385 0.77 +0.9
803,425 - LRK53_RS03385 0.77 -0.6
803,425 - LRK53_RS03385 0.77 -1.5
803,425 - LRK53_RS03385 0.77 -1.4
803,425 - LRK53_RS03385 0.77 -1.3
803,425 - LRK53_RS03385 0.77 -1.1
803,425 - LRK53_RS03385 0.77 -0.3
803,425 - LRK53_RS03385 0.77 -1.6
803,425 - LRK53_RS03385 0.77 -1.4
803,425 - LRK53_RS03385 0.77 -0.1
803,425 - LRK53_RS03385 0.77 +0.9
803,425 - LRK53_RS03385 0.77 -0.8

Or see this region's nucleotide sequence