Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03355 and LRK53_RS03360 are separated by 455 nucleotides LRK53_RS03360 and LRK53_RS03365 are separated by 180 nucleotides LRK53_RS03365 and LRK53_RS03370 are separated by 148 nucleotides
LRK53_RS03355: LRK53_RS03355 - ribonucleotide-diphosphate reductase subunit beta, at 795,031 to 796,239
_RS03355
LRK53_RS03360: LRK53_RS03360 - P-II family nitrogen regulator, at 796,695 to 797,033
_RS03360
LRK53_RS03365: LRK53_RS03365 - accessory factor UbiK family protein, at 797,214 to 797,474
_RS03365
LRK53_RS03370: LRK53_RS03370 - YifB family Mg chelatase-like AAA ATPase, at 797,623 to 799,116
_RS03370
Position (kb) 796
797
798 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 795.713 kb on + strand, within LRK53_RS03355 at 795.713 kb on + strand, within LRK53_RS03355 at 795.714 kb on - strand, within LRK53_RS03355 at 795.714 kb on - strand, within LRK53_RS03355 at 795.714 kb on - strand, within LRK53_RS03355 at 795.714 kb on - strand, within LRK53_RS03355 at 795.839 kb on + strand, within LRK53_RS03355 at 795.839 kb on + strand, within LRK53_RS03355 at 795.839 kb on + strand, within LRK53_RS03355 at 795.839 kb on + strand, within LRK53_RS03355 at 795.840 kb on - strand, within LRK53_RS03355 at 795.840 kb on - strand, within LRK53_RS03355 at 795.840 kb on - strand, within LRK53_RS03355 at 795.840 kb on - strand, within LRK53_RS03355 at 795.840 kb on - strand, within LRK53_RS03355 at 795.878 kb on + strand, within LRK53_RS03355 at 795.878 kb on + strand, within LRK53_RS03355 at 795.878 kb on + strand, within LRK53_RS03355 at 795.878 kb on + strand, within LRK53_RS03355 at 795.878 kb on + strand, within LRK53_RS03355 at 795.878 kb on + strand, within LRK53_RS03355 at 795.879 kb on - strand, within LRK53_RS03355 at 795.879 kb on - strand, within LRK53_RS03355 at 795.879 kb on - strand, within LRK53_RS03355 at 795.879 kb on - strand, within LRK53_RS03355 at 795.879 kb on - strand, within LRK53_RS03355 at 795.879 kb on - strand, within LRK53_RS03355 at 795.879 kb on - strand, within LRK53_RS03355 at 795.911 kb on + strand, within LRK53_RS03355 at 795.989 kb on + strand, within LRK53_RS03355 at 795.989 kb on + strand, within LRK53_RS03355 at 795.989 kb on + strand, within LRK53_RS03355 at 795.990 kb on - strand, within LRK53_RS03355 at 795.990 kb on - strand, within LRK53_RS03355 at 796.379 kb on - strand at 796.379 kb on - strand at 796.379 kb on - strand at 796.454 kb on - strand at 796.539 kb on + strand at 796.540 kb on - strand at 796.557 kb on + strand at 796.557 kb on + strand at 796.557 kb on + strand at 796.557 kb on + strand at 796.557 kb on + strand at 796.557 kb on + strand at 796.558 kb on - strand at 796.558 kb on - strand at 796.558 kb on - strand at 796.604 kb on + strand at 796.604 kb on + strand at 796.604 kb on + strand at 796.605 kb on - strand at 796.605 kb on - strand at 796.645 kb on + strand at 796.645 kb on + strand at 796.645 kb on + strand at 796.645 kb on + strand at 796.645 kb on + strand at 796.645 kb on + strand at 796.645 kb on + strand at 796.645 kb on + strand at 796.645 kb on + strand at 796.645 kb on + strand at 796.646 kb on - strand at 796.646 kb on - strand at 796.646 kb on - strand at 796.646 kb on - strand at 796.646 kb on - strand at 796.646 kb on - strand at 796.646 kb on - strand at 796.646 kb on - strand at 796.696 kb on + strand at 796.697 kb on - strand at 796.697 kb on - strand at 796.697 kb on - strand at 796.882 kb on + strand, within LRK53_RS03360 at 796.882 kb on + strand, within LRK53_RS03360 at 796.882 kb on + strand, within LRK53_RS03360 at 796.883 kb on - strand, within LRK53_RS03360 at 796.883 kb on - strand, within LRK53_RS03360 at 796.897 kb on + strand, within LRK53_RS03360 at 796.898 kb on - strand, within LRK53_RS03360 at 796.898 kb on - strand, within LRK53_RS03360 at 797.052 kb on + strand at 797.052 kb on + strand at 797.053 kb on - strand at 797.053 kb on - strand at 797.053 kb on - strand at 797.119 kb on + strand at 797.119 kb on + strand at 797.119 kb on + strand at 797.120 kb on - strand at 797.120 kb on - strand at 797.120 kb on - strand at 797.120 kb on - strand at 797.120 kb on - strand at 797.120 kb on - strand at 797.120 kb on - strand at 797.131 kb on + strand at 797.131 kb on + strand at 797.131 kb on + strand at 797.132 kb on - strand at 797.150 kb on + strand at 797.150 kb on + strand at 797.151 kb on - strand at 797.151 kb on - strand at 797.151 kb on - strand at 797.180 kb on + strand at 797.180 kb on + strand at 797.180 kb on + strand at 797.180 kb on + strand at 797.180 kb on + strand at 797.180 kb on + strand at 797.180 kb on + strand at 797.180 kb on + strand at 797.180 kb on + strand at 797.181 kb on - strand at 797.181 kb on - strand at 797.183 kb on + strand at 797.183 kb on + strand at 797.183 kb on + strand at 797.183 kb on + strand at 797.183 kb on + strand at 797.184 kb on - strand at 797.184 kb on - strand at 797.184 kb on - strand at 797.184 kb on - strand at 797.184 kb on - strand at 797.184 kb on - strand at 797.184 kb on - strand at 797.184 kb on - strand at 797.187 kb on + strand at 797.187 kb on + strand at 797.188 kb on - strand at 797.188 kb on - strand at 797.188 kb on - strand at 797.222 kb on + strand at 797.222 kb on + strand at 797.222 kb on + strand at 797.222 kb on + strand at 797.222 kb on + strand at 797.223 kb on - strand at 797.223 kb on - strand at 797.223 kb on - strand at 797.223 kb on - strand at 797.396 kb on + strand, within LRK53_RS03365 at 797.538 kb on + strand at 797.538 kb on + strand at 797.538 kb on + strand at 797.539 kb on - strand at 797.539 kb on - strand at 797.539 kb on - strand at 797.539 kb on - strand at 797.542 kb on + strand at 797.542 kb on + strand at 797.542 kb on + strand at 797.542 kb on + strand at 797.543 kb on - strand at 797.543 kb on - strand at 797.543 kb on - strand at 797.543 kb on - strand at 797.690 kb on + strand at 797.690 kb on + strand at 797.690 kb on + strand at 797.690 kb on + strand at 797.690 kb on + strand at 797.690 kb on + strand at 797.690 kb on + strand at 797.690 kb on + strand at 797.690 kb on + strand at 797.690 kb on + strand at 797.691 kb on - strand at 797.691 kb on - strand at 797.691 kb on - strand at 797.691 kb on - strand at 797.691 kb on - strand at 797.691 kb on - strand at 797.691 kb on - strand at 797.691 kb on - strand at 797.691 kb on - strand at 797.691 kb on - strand at 797.691 kb on - strand at 797.800 kb on + strand, within LRK53_RS03370
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Manganese (II) chloride tetrahydrate 5 mM remove 795,713 + LRK53_RS03355 0.56 -0.4 795,713 + LRK53_RS03355 0.56 +0.9 795,714 - LRK53_RS03355 0.56 -1.4 795,714 - LRK53_RS03355 0.56 +0.9 795,714 - LRK53_RS03355 0.56 -0.4 795,714 - LRK53_RS03355 0.56 -0.6 795,839 + LRK53_RS03355 0.67 -1.1 795,839 + LRK53_RS03355 0.67 -0.4 795,839 + LRK53_RS03355 0.67 -1.9 795,839 + LRK53_RS03355 0.67 -1.1 795,840 - LRK53_RS03355 0.67 -0.1 795,840 - LRK53_RS03355 0.67 -0.4 795,840 - LRK53_RS03355 0.67 +0.6 795,840 - LRK53_RS03355 0.67 +0.9 795,840 - LRK53_RS03355 0.67 -1.2 795,878 + LRK53_RS03355 0.70 -1.3 795,878 + LRK53_RS03355 0.70 -1.4 795,878 + LRK53_RS03355 0.70 +1.5 795,878 + LRK53_RS03355 0.70 -1.9 795,878 + LRK53_RS03355 0.70 -0.1 795,878 + LRK53_RS03355 0.70 +0.4 795,879 - LRK53_RS03355 0.70 -0.6 795,879 - LRK53_RS03355 0.70 +0.9 795,879 - LRK53_RS03355 0.70 +0.5 795,879 - LRK53_RS03355 0.70 -1.6 795,879 - LRK53_RS03355 0.70 +0.9 795,879 - LRK53_RS03355 0.70 -0.8 795,879 - LRK53_RS03355 0.70 -1.0 795,911 + LRK53_RS03355 0.73 +0.9 795,989 + LRK53_RS03355 0.79 -0.4 795,989 + LRK53_RS03355 0.79 -1.6 795,989 + LRK53_RS03355 0.79 -0.6 795,990 - LRK53_RS03355 0.79 -0.9 795,990 - LRK53_RS03355 0.79 -0.5 796,379 - -0.3 796,379 - -0.2 796,379 - +0.1 796,454 - -0.1 796,539 + -2.2 796,540 - -1.6 796,557 + -0.9 796,557 + +1.9 796,557 + -0.6 796,557 + -1.4 796,557 + +0.1 796,557 + -1.1 796,558 - +1.4 796,558 - -0.2 796,558 - -1.6 796,604 + -1.9 796,604 + -2.1 796,604 + -0.5 796,605 - -1.4 796,605 - -0.3 796,645 + +0.9 796,645 + -1.2 796,645 + +0.9 796,645 + -0.4 796,645 + +0.5 796,645 + -1.6 796,645 + -1.6 796,645 + -3.1 796,645 + +0.1 796,645 + -2.1 796,646 - -1.3 796,646 - -1.2 796,646 - -1.0 796,646 - +0.9 796,646 - -3.2 796,646 - -0.1 796,646 - -0.4 796,646 - +2.9 796,696 + -1.3 796,697 - -1.2 796,697 - -0.2 796,697 - -2.2 796,882 + LRK53_RS03360 0.55 +0.9 796,882 + LRK53_RS03360 0.55 -0.6 796,882 + LRK53_RS03360 0.55 -1.1 796,883 - LRK53_RS03360 0.55 -1.1 796,883 - LRK53_RS03360 0.55 -0.6 796,897 + LRK53_RS03360 0.60 -1.6 796,898 - LRK53_RS03360 0.60 +0.9 796,898 - LRK53_RS03360 0.60 -2.9 797,052 + -1.8 797,052 + -0.8 797,053 - -1.1 797,053 - +0.4 797,053 - -0.4 797,119 + +0.4 797,119 + -0.4 797,119 + -0.4 797,120 - -0.1 797,120 - -0.1 797,120 - -1.6 797,120 - -1.9 797,120 - +0.9 797,120 - -0.1 797,120 - -0.4 797,131 + -0.6 797,131 + -1.9 797,131 + -0.4 797,132 - -1.1 797,150 + -0.6 797,150 + -0.1 797,151 - -0.9 797,151 - -0.5 797,151 - -1.3 797,180 + -0.9 797,180 + -2.9 797,180 + -1.1 797,180 + -1.1 797,180 + -0.6 797,180 + -0.4 797,180 + -0.1 797,180 + -1.3 797,180 + +0.9 797,181 - -1.1 797,181 - +0.9 797,183 + -1.0 797,183 + -0.8 797,183 + -1.9 797,183 + -0.6 797,183 + -1.1 797,184 - +1.5 797,184 - -0.6 797,184 - +0.9 797,184 - -0.1 797,184 - -0.1 797,184 - -0.6 797,184 - -0.4 797,184 - +0.9 797,187 + -1.1 797,187 + -0.1 797,188 - -1.4 797,188 - -1.4 797,188 - +1.9 797,222 + -0.7 797,222 + -0.4 797,222 + +0.4 797,222 + -0.9 797,222 + -0.1 797,223 - -2.2 797,223 - -0.5 797,223 - +0.0 797,223 - -0.1 797,396 + LRK53_RS03365 0.70 -0.6 797,538 + -1.3 797,538 + -1.6 797,538 + -1.7 797,539 - -0.4 797,539 - +0.3 797,539 - -1.4 797,539 - -2.1 797,542 + -1.2 797,542 + +0.4 797,542 + -2.1 797,542 + -1.5 797,543 - -1.4 797,543 - +1.5 797,543 - -1.4 797,543 - -0.1 797,690 + -1.4 797,690 + +1.5 797,690 + -0.6 797,690 + +0.4 797,690 + -0.1 797,690 + -0.6 797,690 + +0.9 797,690 + +0.6 797,690 + -0.6 797,690 + -0.9 797,691 - -0.1 797,691 - +0.9 797,691 - +0.9 797,691 - +1.5 797,691 - -1.7 797,691 - +1.9 797,691 - -1.3 797,691 - -1.5 797,691 - -1.1 797,691 - -1.6 797,691 - -1.6 797,800 + LRK53_RS03370 0.12 -2.3
Or see this region's nucleotide sequence