Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_07210

Experiment: G1M1_D7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_07200 and HUW76_07205 overlap by 23 nucleotidesHUW76_07205 and HUW76_07210 are separated by 30 nucleotidesHUW76_07210 and HUW76_07215 are separated by 216 nucleotidesHUW76_07215 and HUW76_07220 overlap by 8 nucleotides HUW76_07200: HUW76_07200 - sensor histidine kinase, at 1,498,568 to 1,498,972 _07200 HUW76_07205: HUW76_07205 - response regulator transcription factor, at 1,498,950 to 1,499,624 _07205 HUW76_07210: HUW76_07210 - PepSY domain-containing protein, at 1,499,655 to 1,500,131 _07210 HUW76_07215: HUW76_07215 - ABC transporter ATP-binding protein, at 1,500,348 to 1,501,025 _07215 HUW76_07220: HUW76_07220 - ABC transporter permease, at 1,501,018 to 1,502,187 _07220 Position (kb) 1499 1500 1501Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5at 1498.803 kb on + strand, within HUW76_07200at 1498.808 kb on + strand, within HUW76_07200at 1498.821 kb on - strand, within HUW76_07200at 1498.829 kb on - strand, within HUW76_07200at 1498.870 kb on + strand, within HUW76_07200at 1498.878 kb on - strand, within HUW76_07200at 1498.899 kb on + strand, within HUW76_07200at 1498.918 kb on + strand, within HUW76_07200at 1498.918 kb on + strand, within HUW76_07200at 1498.918 kb on + strand, within HUW76_07200at 1498.920 kb on - strand, within HUW76_07200at 1498.920 kb on - strand, within HUW76_07200at 1498.926 kb on - strand, within HUW76_07200at 1498.926 kb on - strand, within HUW76_07200at 1498.926 kb on - strand, within HUW76_07200at 1498.926 kb on - strand, within HUW76_07200at 1498.928 kb on - strand, within HUW76_07200at 1498.928 kb on - strand, within HUW76_07200at 1498.928 kb on - strand, within HUW76_07200at 1498.928 kb on - strand, within HUW76_07200at 1498.928 kb on - strand, within HUW76_07200at 1498.928 kb on - strand, within HUW76_07200at 1498.928 kb on - strand, within HUW76_07200at 1498.928 kb on - strand, within HUW76_07200at 1498.928 kb on - strand, within HUW76_07200at 1498.969 kb on + strandat 1498.982 kb on - strandat 1498.994 kb on + strandat 1499.067 kb on - strand, within HUW76_07205at 1499.104 kb on - strand, within HUW76_07205at 1499.113 kb on + strand, within HUW76_07205at 1499.228 kb on - strand, within HUW76_07205at 1499.287 kb on - strand, within HUW76_07205at 1499.389 kb on - strand, within HUW76_07205at 1499.402 kb on - strand, within HUW76_07205at 1499.402 kb on - strand, within HUW76_07205at 1499.402 kb on - strand, within HUW76_07205at 1499.439 kb on - strand, within HUW76_07205at 1499.449 kb on - strand, within HUW76_07205at 1499.474 kb on - strand, within HUW76_07205at 1499.529 kb on + strand, within HUW76_07205at 1499.737 kb on - strand, within HUW76_07210at 1499.737 kb on - strand, within HUW76_07210at 1499.808 kb on + strand, within HUW76_07210at 1499.816 kb on - strand, within HUW76_07210at 1499.868 kb on - strand, within HUW76_07210at 1499.868 kb on - strand, within HUW76_07210at 1499.883 kb on - strand, within HUW76_07210at 1499.883 kb on - strand, within HUW76_07210at 1499.969 kb on + strand, within HUW76_07210at 1499.979 kb on - strand, within HUW76_07210

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Per-strain Table

Position Strand Gene LocusTag Fraction G1M1_D7
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1,498,803 + HUW76_07200 0.58 +3.7
1,498,808 + HUW76_07200 0.59 +3.6
1,498,821 - HUW76_07200 0.62 +0.3
1,498,829 - HUW76_07200 0.64 +0.3
1,498,870 + HUW76_07200 0.75 +5.3
1,498,878 - HUW76_07200 0.77 +1.6
1,498,899 + HUW76_07200 0.82 +3.5
1,498,918 + HUW76_07200 0.86 +0.1
1,498,918 + HUW76_07200 0.86 +0.4
1,498,918 + HUW76_07200 0.86 -2.0
1,498,920 - HUW76_07200 0.87 +0.9
1,498,920 - HUW76_07200 0.87 -0.6
1,498,926 - HUW76_07200 0.88 -0.1
1,498,926 - HUW76_07200 0.88 +0.5
1,498,926 - HUW76_07200 0.88 +1.2
1,498,926 - HUW76_07200 0.88 +1.0
1,498,928 - HUW76_07200 0.89 +0.0
1,498,928 - HUW76_07200 0.89 +0.2
1,498,928 - HUW76_07200 0.89 +1.3
1,498,928 - HUW76_07200 0.89 +0.6
1,498,928 - HUW76_07200 0.89 -0.3
1,498,928 - HUW76_07200 0.89 +0.3
1,498,928 - HUW76_07200 0.89 -0.7
1,498,928 - HUW76_07200 0.89 -0.1
1,498,928 - HUW76_07200 0.89 -0.1
1,498,969 + -1.3
1,498,982 - -0.5
1,498,994 + +0.4
1,499,067 - HUW76_07205 0.17 -1.7
1,499,104 - HUW76_07205 0.23 -0.9
1,499,113 + HUW76_07205 0.24 -0.3
1,499,228 - HUW76_07205 0.41 +2.1
1,499,287 - HUW76_07205 0.50 -1.5
1,499,389 - HUW76_07205 0.65 -2.2
1,499,402 - HUW76_07205 0.67 -0.9
1,499,402 - HUW76_07205 0.67 +2.4
1,499,402 - HUW76_07205 0.67 -1.0
1,499,439 - HUW76_07205 0.72 +1.3
1,499,449 - HUW76_07205 0.74 -2.0
1,499,474 - HUW76_07205 0.78 +0.2
1,499,529 + HUW76_07205 0.86 -1.6
1,499,737 - HUW76_07210 0.17 -3.9
1,499,737 - HUW76_07210 0.17 -2.3
1,499,808 + HUW76_07210 0.32 -1.5
1,499,816 - HUW76_07210 0.34 -4.9
1,499,868 - HUW76_07210 0.45 -2.5
1,499,868 - HUW76_07210 0.45 -1.9
1,499,883 - HUW76_07210 0.48 -2.3
1,499,883 - HUW76_07210 0.48 -2.8
1,499,969 + HUW76_07210 0.66 -0.3
1,499,979 - HUW76_07210 0.68 -4.6

Or see this region's nucleotide sequence