Experiment: G1M1_D7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HUW76_07200 and HUW76_07205 overlap by 23 nucleotides HUW76_07205 and HUW76_07210 are separated by 30 nucleotides HUW76_07210 and HUW76_07215 are separated by 216 nucleotides HUW76_07215 and HUW76_07220 overlap by 8 nucleotides
HUW76_07200: HUW76_07200 - sensor histidine kinase, at 1,498,568 to 1,498,972
_07200
HUW76_07205: HUW76_07205 - response regulator transcription factor, at 1,498,950 to 1,499,624
_07205
HUW76_07210: HUW76_07210 - PepSY domain-containing protein, at 1,499,655 to 1,500,131
_07210
HUW76_07215: HUW76_07215 - ABC transporter ATP-binding protein, at 1,500,348 to 1,501,025
_07215
HUW76_07220: HUW76_07220 - ABC transporter permease, at 1,501,018 to 1,502,187
_07220
Position (kb)
1499
1500
1501 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3
4
5 at 1498.803 kb on + strand, within HUW76_07200 at 1498.808 kb on + strand, within HUW76_07200 at 1498.821 kb on - strand, within HUW76_07200 at 1498.829 kb on - strand, within HUW76_07200 at 1498.870 kb on + strand, within HUW76_07200 at 1498.878 kb on - strand, within HUW76_07200 at 1498.899 kb on + strand, within HUW76_07200 at 1498.918 kb on + strand, within HUW76_07200 at 1498.918 kb on + strand, within HUW76_07200 at 1498.918 kb on + strand, within HUW76_07200 at 1498.920 kb on - strand, within HUW76_07200 at 1498.920 kb on - strand, within HUW76_07200 at 1498.926 kb on - strand, within HUW76_07200 at 1498.926 kb on - strand, within HUW76_07200 at 1498.926 kb on - strand, within HUW76_07200 at 1498.926 kb on - strand, within HUW76_07200 at 1498.928 kb on - strand, within HUW76_07200 at 1498.928 kb on - strand, within HUW76_07200 at 1498.928 kb on - strand, within HUW76_07200 at 1498.928 kb on - strand, within HUW76_07200 at 1498.928 kb on - strand, within HUW76_07200 at 1498.928 kb on - strand, within HUW76_07200 at 1498.928 kb on - strand, within HUW76_07200 at 1498.928 kb on - strand, within HUW76_07200 at 1498.928 kb on - strand, within HUW76_07200 at 1498.969 kb on + strand at 1498.982 kb on - strand at 1498.994 kb on + strand at 1499.067 kb on - strand, within HUW76_07205 at 1499.104 kb on - strand, within HUW76_07205 at 1499.113 kb on + strand, within HUW76_07205 at 1499.228 kb on - strand, within HUW76_07205 at 1499.287 kb on - strand, within HUW76_07205 at 1499.389 kb on - strand, within HUW76_07205 at 1499.402 kb on - strand, within HUW76_07205 at 1499.402 kb on - strand, within HUW76_07205 at 1499.402 kb on - strand, within HUW76_07205 at 1499.439 kb on - strand, within HUW76_07205 at 1499.449 kb on - strand, within HUW76_07205 at 1499.474 kb on - strand, within HUW76_07205 at 1499.529 kb on + strand, within HUW76_07205 at 1499.737 kb on - strand, within HUW76_07210 at 1499.737 kb on - strand, within HUW76_07210 at 1499.808 kb on + strand, within HUW76_07210 at 1499.816 kb on - strand, within HUW76_07210 at 1499.868 kb on - strand, within HUW76_07210 at 1499.868 kb on - strand, within HUW76_07210 at 1499.883 kb on - strand, within HUW76_07210 at 1499.883 kb on - strand, within HUW76_07210 at 1499.969 kb on + strand, within HUW76_07210 at 1499.979 kb on - strand, within HUW76_07210
Per-strain Table
Position Strand Gene LocusTag Fraction G1M1_D7 remove 1,498,803 + HUW76_07200 0.58 +3.7 1,498,808 + HUW76_07200 0.59 +3.6 1,498,821 - HUW76_07200 0.62 +0.3 1,498,829 - HUW76_07200 0.64 +0.3 1,498,870 + HUW76_07200 0.75 +5.3 1,498,878 - HUW76_07200 0.77 +1.6 1,498,899 + HUW76_07200 0.82 +3.5 1,498,918 + HUW76_07200 0.86 +0.1 1,498,918 + HUW76_07200 0.86 +0.4 1,498,918 + HUW76_07200 0.86 -2.0 1,498,920 - HUW76_07200 0.87 +0.9 1,498,920 - HUW76_07200 0.87 -0.6 1,498,926 - HUW76_07200 0.88 -0.1 1,498,926 - HUW76_07200 0.88 +0.5 1,498,926 - HUW76_07200 0.88 +1.2 1,498,926 - HUW76_07200 0.88 +1.0 1,498,928 - HUW76_07200 0.89 +0.0 1,498,928 - HUW76_07200 0.89 +0.2 1,498,928 - HUW76_07200 0.89 +1.3 1,498,928 - HUW76_07200 0.89 +0.6 1,498,928 - HUW76_07200 0.89 -0.3 1,498,928 - HUW76_07200 0.89 +0.3 1,498,928 - HUW76_07200 0.89 -0.7 1,498,928 - HUW76_07200 0.89 -0.1 1,498,928 - HUW76_07200 0.89 -0.1 1,498,969 + -1.3 1,498,982 - -0.5 1,498,994 + +0.4 1,499,067 - HUW76_07205 0.17 -1.7 1,499,104 - HUW76_07205 0.23 -0.9 1,499,113 + HUW76_07205 0.24 -0.3 1,499,228 - HUW76_07205 0.41 +2.1 1,499,287 - HUW76_07205 0.50 -1.5 1,499,389 - HUW76_07205 0.65 -2.2 1,499,402 - HUW76_07205 0.67 -0.9 1,499,402 - HUW76_07205 0.67 +2.4 1,499,402 - HUW76_07205 0.67 -1.0 1,499,439 - HUW76_07205 0.72 +1.3 1,499,449 - HUW76_07205 0.74 -2.0 1,499,474 - HUW76_07205 0.78 +0.2 1,499,529 + HUW76_07205 0.86 -1.6 1,499,737 - HUW76_07210 0.17 -3.9 1,499,737 - HUW76_07210 0.17 -2.3 1,499,808 + HUW76_07210 0.32 -1.5 1,499,816 - HUW76_07210 0.34 -4.9 1,499,868 - HUW76_07210 0.45 -2.5 1,499,868 - HUW76_07210 0.45 -1.9 1,499,883 - HUW76_07210 0.48 -2.3 1,499,883 - HUW76_07210 0.48 -2.8 1,499,969 + HUW76_07210 0.66 -0.3 1,499,979 - HUW76_07210 0.68 -4.6
Or see this region's nucleotide sequence